Trematomus bernacchii (emerald rockcod): 117499444
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Entry
117499444 CDS
T09643
Name
(RefSeq) poly(A) polymerase beta-like
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117499444
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117499444
Enzymes [BR:
tben01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
117499444
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
117499444
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
Nrap_D2
Motif
Other DBs
NCBI-GeneID:
117499444
NCBI-ProteinID:
XP_034007715
LinkDB
All DBs
Position
Unknown
AA seq
702 aa
AA seq
DB search
MPRRRRRTAPSRPSQKVYGPPPPTREEENAQENDLIEILESFGCFESNVELRHRENVVQR
LESLFKEWLIEMCLQMNLPGIVPQKVGGKLVPFGSHHLGVASKGADIDLLCVGPGFLQRK
DFFSSFVRKLKRQREVKDIRVIEEAFVPVVKLTFEGIEIDLVFARVARNRVPQEMDLLRE
DWLQGTDLHSVRSLNGYRVTEEILRLVPNVQNFRLALRTIKLWAKQRNIYSNSLGFLGGV
SWAILVARICQEYPNASASTLVTKFFKEYNMWKWPNPIMLRELKDCHFNLPVWDARVNLA
DRSHSMPIITPAYPMQNTAFNVTPSTLAIMKEEIQRGHTIAGWSQLFEKPNFLRKYKYVI
ICPKMNMCISIHKIHNPFLIWIFPPSLLVILSSDILNIYIFVSVLMPKAFCNSIIMLSKK
ADLYIGCFFMLCFFLMKMEQCSHCIKCCSAYLHLNYVFVFTRCALYKMPACAQRLNAVTC
IATVVSYVSRHYVLLQATSATEEQHPAWVGLVESRIRHLVVNLERNVLVTRAHINVQSYP
ERSTGNARAPVRTKWLIGLVFNEKGGQHLSIDLTLQRFSDIVHSVAGRCQMFREGMSTSA
RYMSQKDFSWDLPQEPGRRVISEEPQPSVSTAAPSLTSHQATKRSRSPHSESSSKKFKSD
EGPSEEVCLSQSKSGGLKRARTPESESPSKRVRTDLLRPAET
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgacgaagaaggaggacagctccatccagacctagtcaaaaggtgtatgggccc
cccccaccaacacgtgaggaggagaatgcccaagaaaatgacttgatcgagattctcgag
tcattcggatgctttgagagcaacgtggagctgagacacagagagaatgtggtccagaga
ctggagtcactgttcaaagagtggctcatagagatgtgtctgcaaatgaatttaccaggc
attgtcccgcagaaggttggagggaagctcgtccctttcggctcccatcacctgggggtc
gcctcgaaaggcgccgacatcgacctcctctgtgtgggaccgggtttcctccagaggaag
gacttcttctcctctttcgttagaaaactgaagaggcagagagaggtcaaagacatacgg
gtcattgaagaggcattcgtccctgtcgttaaactgacctttgaaggaattgagatagac
ttagtctttgccagggtggccaggaacagagtcccacaggaaatggacctgctccgagag
gattggctacaggggacggacctccactctgtgaggagtctgaacggctacagagtaaca
gaggagatcctcaggctcgtgcctaatgttcagaacttcagactcgctctgaggaccata
aagctctgggccaaacaaagaaacatatactcaaactctttaggtttccttggcggtgtt
tcctgggccattctggtagccagaatctgccaggagtacccgaacgcctcagcctccacc
ctggtcacaaagtttttcaaggagtacaacatgtggaagtggccaaaccccatcatgttg
agggagttgaaggattgtcatttcaaccttcctgtgtgggatgcaagggttaatctggca
gaccgctcccactctatgccgatcatcacgccggcatacccaatgcagaacactgctttc
aacgtgactccctccaccttggccatcatgaaggaggagatccagcgtggccacactatc
gccggctggtcccaactctttgagaagcccaatttcctcaggaagtacaagtatgtaata
atctgcccaaagatgaacatgtgtatcagcattcacaaaatacacaatcctttcttaata
tggatatttccacctagtttattagtcattcttagctctgatattttaaacatatacatt
tttgtgtctgtcttgatgcctaaagctttttgtaatagtataattatgctttcaaagaag
gcagatctttatatcggatgttttttcatgttgtgttttttcttaatgaagatggaacag
tgttcacactgcataaaatgctgttctgcatatcttcatctgaattacgtatttgttttc
acacgttgtgctttatataagatgccagcctgtgcacaaaggctcaatgctgtgacgtgt
attgcaactgttgtctcttatgtttcaaggcattacgttctgctgcaagctacttcagct
acagaggagcagcatcctgcatgggttggcctggtggagtctagaatccgacacctggtg
gtaaatctggagagaaatgtgttggtgacccgggcccacattaacgtccagtcctaccct
gaacgcagcacgggcaacgccagagcgccggtcagaacaaagtggctgattggacttgtg
ttcaatgaaaaggggggccaacacctgtcaatagacctgactctccagcgcttcagtgac
atcgtccacagtgtggcaggtcgctgtcagatgttcagagaggggatgagcacatcagct
cgatacatgtcccagaaggacttcagctgggatctgcctcaggagcctggcaggagggtt
atcagtgaagagccgcagccctcagtgagcaccgctgctccatctctgacgagtcaccag
gcgacaaagaggtctcgttcgcctcactcagaaagttccagcaagaagtttaaatctgac
gaggggccgagcgaggaagtctgtctcagccaatcaaagagtggaggtctcaagagagcc
cgcactcctgagtcagagtcaccgagcaagagggtccgaactgatctgctgaggcccgct
gaaacctga
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