Trematomus bernacchii (emerald rockcod): 117499513
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Entry
117499513 CDS
T09643
Symbol
col9a1b
Name
(RefSeq) collagen, type IX, alpha 1b isoform X1
KO
K08131
collagen type IX alpha
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04510
Focal adhesion
tben04512
ECM-receptor interaction
tben04518
Integrin signaling
tben04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117499513 (col9a1b)
04518 Integrin signaling
117499513 (col9a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117499513 (col9a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117499513 (col9a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tben00535
]
117499513 (col9a1b)
Proteoglycans [BR:
tben00535
]
Extracellular matrix (ECM) proteoglycans
Others
117499513 (col9a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117499513
NCBI-ProteinID:
XP_034007816
LinkDB
All DBs
Position
Unknown
AA seq
695 aa
AA seq
DB search
MYYFHVHVFIQFELQSMLIHCDLTRARTEPCYDLPARTSTDGTEVQRSQGPSGPAGVPGI
DAISGERGDDGGEGLPGPDGDSGKPGSTGLPGLPGNDGLTGPFGDAGPDGPFGQKGEPGK
SGPRGTTGVGPDGPPGPPGPGGLLGELGKVGPLGSIGVRGPQGPRGPTGARGAAGMQGSA
DLCTGSCPPGTSGHPGLPGMKGHKGVKGGSGEPGKQGHKGEEGDQGGSGELGSQGPTGPQ
GILGAMGMMGHKGELGARGLGGDPGPQGVGGATGDRGQRGVMGELGPNGETGVLGSRGIT
GVPGPKGDGGLPGVDGREGIPGMPGGKGLIGKSGVPGEVGLQGLPGLPGSSGPKGLSGSK
GDVGQAGFTGTMGPAGKAGERGNQGGLGPIGPIGEPGAVGVQGPLGSSGKPGGRGSKGDP
GLPGLPGPHGLPGVKGERGERGDLGTKGDQGTQGDEGNPGDKGELGEGGEGGAKGETGNI
GDAGKRGPEGSRGQPGIDGPAGTPGPRGMQGNRGPPGVRGSQGPAGKEPSDQHIKQVCMR
VMQEQLAQLAASLRRPESGAVGLPGKPGPPGAPGSQGDNGFPGQGGTRGLPGLKGPQGML
GVKGPKGELGDRGSRGPTARGPKGQPGASGLPGEPGKPGYGQDGRDGQRGPPGIHGQPGV
PGPPGSAGPNGYCDPSSCNLQPGAQLVDVKGPAGN
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgtattatttccatgttcatgtgtttatacagtttgaactccagtcaatgctgattcac
tgcgacttgacgcgagcccggacagagccttgttatgacctcccagccaggacatcgacg
gatgggaccgaggtgcagaggagccaaggaccttctgggcctgcaggtgtaccgggaatt
gatgccatttctggggaaaggggagacgatggcggagagggacttcctggacctgatgga
gattcaggtaaacccggctctacaggattacctggacttcctggaaatgatggtttgacc
ggcccttttggagatgcagggcccgatggtcccttcggacagaaaggtgaacctggaaaa
tctggacctcgtggaacaactggggttgggccagatggaccccccggaccacctgggcct
ggaggacttttgggtgaactgggaaaagttggaccacttgggtccataggtgtgagaggg
ccacagggacctcgtggacctacaggggccagaggtgcagctggaatgcaaggcagtgct
gacctgtgtacaggctcttgccctcctgggacctctggacatccaggccttcctggcatg
aagggccacaaaggtgtaaaaggcggatcaggagaacctgggaaacaagggcacaagggt
gaggaaggagaccagggtggatcaggggagctcggatcacaaggaccaacgggtccccag
ggaattcttggggccatgggaatgatgggccacaagggagagctgggagctcggggtctt
ggtggagatccaggtccccagggtgttgggggggcaactggggatcgaggccagagaggt
gtgatgggcgagcttgggcctaatggagaaactggtgttctggggtcgagaggaatcaca
ggtgttcctggtccaaagggagatggtggcttgcccggtgtggacggccgcgagggtatt
cctgggatgcctggaggaaagggactcattgggaagtcaggcgttcctggagaggttgga
cttcaggggcttcctggtttgcctggttcatctggaccaaaaggcttgagtggctctaag
ggagacgtgggtcaggcaggcttcacgggaacaatgggacctgctggcaaagctggggag
cgtggaaaccagggggggcttggacctattgggcctattggagaacctggagctgtgggt
gtgcaaggccctctaggttcatcgggcaagccaggtggcaggggatccaaaggtgacccc
ggcctccctggtcttcctggtcctcacggcctgcccggagtgaagggagagaggggagaa
cgtggagatctaggaaccaaaggagatcagggaacacaaggtgatgagggaaaccctgga
gacaaaggggagctcggtgagggtggagaaggtggagctaaaggagagaccggtaacata
ggcgatgctggcaaaagaggaccagagggaagcagaggacagcctggcatcgatgggccg
gctggcacacctggaccccggggcatgcaggggaacaggggcccccctggagtgagaggg
tcccagggtcctgcgggtaaagagccgagcgatcagcacatcaaacaagtttgcatgcgc
gtcatgcaagaacagctggcacagttagcggctagtttaagaaggccagagtcgggcgca
gttggtttacctggaaaacctggtcctccaggggcccctggctctcaaggagacaatgga
ttcccgggacagggcggaacaagaggccttccaggactcaaagggccacaaggaatgctt
ggagttaaaggacccaaaggtgaactgggagacagaggctccagagggcccactgctcga
ggacctaaaggtcagccaggagcttccggactccctggtgagcctggcaaacctggctac
ggtcaggacggtcgggacgggcagagaggacctcctgggatccacggacagcccggtgtt
cctgggcctcccgggtcagccggtcctaatggttactgcgacccgtcatcctgcaacctc
cagccaggagcccagcttgtggatgtgaagggccctgcaggaaactaa
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