Trematomus bernacchii (emerald rockcod): 117499515
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Entry
117499515 CDS
T09643
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1-like
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
117499515
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tben04040
]
117499515
Ion channels [BR:
tben04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
117499515
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
Motif
Other DBs
NCBI-GeneID:
117499515
NCBI-ProteinID:
XP_034007821
LinkDB
All DBs
Position
Unknown
AA seq
1187 aa
AA seq
DB search
MLAEAGGSVPHGSDSYMRRSNINNNINQDSSILISKMEDVVIPFSSEVPCDNNGQRMWWA
FLASSMVTFFGGLFIILLWRTMQYMWTVCCHCNVKPKEVKVIQPVATDKPKGEGVKEEVP
MSEVGWMTSVKDWAGVMISAQTLTGRVLVVLVFALSIGALGIYFIDSSDPIESCQNFWKD
FTLQIDMAFNVFFLLYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGLR
FLRALRLIQFSEILQFLNILKTSNSIKLVNLCSIFISTWLTAAGFIHLVENSGDPWENFQ
NSQVLSYWECVYLLMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLAMFASYVPEIIELIG
NRKKYGGSYSAVNGRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLEL
EALFKRHFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISI
KNYHPKIRIITQMLQYHNKAHLLNIPSWNWREGDDAICLAELKAGFIAQSCLAQGLSTML
ANLFSMRSFIEIEEDTWQKYYLEGVANEMYTEYLSSAFVGLTFPTICELCYVKLKLLLIA
IEYKSEQRESSILINPGNNVKMQEGTLGFFIASDAKEVKRAFFYCKACHDDITDPKRIKK
CGCKRLIYSKYKYNGYVRSPADGATTPGNSGSQKEAGVRFKADCNLVEDEHPSTLSPKKK
QRNGGMRNSPNNSPKMMSRHDPLLIPGNEQIESMDMNVKRYDSTGMFHWCPSKEIEKVIL
TRSEASMTVLSGHVVVCIFGDVTSALVGLRNLVMPLRASNFHYHELKPIVFVGSLEYLRR
EWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQNNIEDASLQDKECILASL
NIKSMQFDDSIGVLQANSQGFTPPGMDRSSPDSSPVHGFVRQASVTTGANIPIITELVND
SNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGA
TPELEALLAEENALRGGYSTPQTLANRDRCRVAQLALYDGPFADLGDGGCYGDLFCKALK
TYNMLCFGIYRLRDAHINGPSPCTKRYVITNPPYEFELVPSDLIFCLMQFDHNAGQSRTN
LSHSSHSSHSSSKKSSSVHSIPASNRQNRSSKTREPRDKQKKEMVYR
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgctagctgaggcaggtggctccgttccccatggaagcgacagctatatgaggagaagc
aatatcaataataatataaatcaggactcttcaatcttaatatccaagatggaagacgtt
gtcatcccgttctcgtctgaggtgccctgcgacaataatgggcagcgtatgtggtgggca
ttcctcgcctcctccatggtgacgttttttgggggtctcttcatcatcctgctgtggagg
acaatgcaatatatgtggacggtttgttgccactgcaacgtcaaaccgaaggaggtgaag
gtgatccagcccgtagccacagacaaaccgaagggtgaaggtgtgaaggaggaggtcccc
atgagcgaagtgggatggatgacttcagtcaaagactgggccggtgtcatgatctccgct
cagacgctcactggcagagttctggtggtgttggtctttgcgctcagcattggggccctc
ggaatatacttcatagactcatcagatccgatagaatcctgccagaatttctggaaagat
ttcacgttacagatcgatatggccttcaatgtcttcttcctactttactttggactgcgc
tttatagcggccaatgataaactatggttctggctggaggtcaactcagtggtagacttc
tttactgttcctcccgtgtttgtttctgtctacttgaacagaagctggctcggcttaaga
tttctaagagcactacgattgatacagttttcggaaatacttcagtttttgaacatcttg
aaaacaagcaattccatcaagctggtaaacctgtgttccatcttcatcagcacatggctc
acagcggcaggattcatacatttggttgaaaactcaggggatccctgggaaaacttccag
aattctcaagtactttcctattgggaatgtgtctatttgctgatggtgacgatgtctaca
gtgggctatggggacgtctatgcaaaaaccaccttggggcgcctgtttatggtcttcttc
atcctgggtggtttggccatgtttgccagctacgtccctgaaatcatagagttaatagga
aaccgaaagaaatatggtggttcctatagtgcggttaatgggagaaagcatattgtggtc
tgtggtcatattaccctcgaaagtgtctccaacttcctcaaagacttcctacacaaggac
agggatgatgtcaatgttgaaattgtttttctccataatatttcccctaatcttgagctg
gaagccttattcaaacgacattttacgcaagtagaattctaccaaggatctgttctcaac
cctcacgacctcgccagagtgaagatcgagtcagcagatgcctgcttaatcctagccaat
aaatactgtgcagatcctgatgctgaagatgcctccaacatcatgagggttatttcgatc
aagaactaccatcccaagatcagaataatcacacaaatgctacagtatcacaataaggcc
catctgcttaacattccgagctggaactggagagagggtgacgatgcgatctgcctggcg
gagctgaaggcaggcttcatagcccagagctgtctggcccagggcctgtccaccatgctc
gccaacctcttctctatgaggtccttcattgagattgaggaggacacatggcagaagtat
tacctagaaggggtggctaatgagatgtacaccgagtatttgtccagtgcctttgtcggc
ctcaccttcccaactatctgtgagctgtgttacgtgaagctgaagctgttgcttattgcc
atcgaatacaagtcggagcagagagagagcagcatcctcattaacccgggaaacaatgtg
aagatgcaggagggaactcttgggttctttattgccagtgatgccaaagaagtgaagagg
gcatttttctactgcaaagcttgtcatgacgacatcacagaccctaagcggataaagaaa
tgtggctgcaaacgactgatttattccaaatataagtataatggatatgtcagatcacca
gcagatggcgctacaacaccagggaacagtggaagtcaaaaagaggctggcgttcgattc
aaagctgattgcaatttagtcgaagacgagcatccatcaactctctcgcccaaaaaaaag
cagcgcaatggagggatgcgaaactcacccaacaactcgcccaaaatgatgagtcgacac
gacccccttcttattcctggaaatgaacaaatcgagagcatggacatgaacgtgaagagg
tatgactcgacagggatgtttcactggtgcccgtcaaaggagatcgaaaaagtcatcctg
acccggagtgaagcctccatgacagtactgagcggccatgtggtggtctgtatatttggg
gatgtcacgtccgctttggtggggctgcgaaacttggtgatgcctttaagagccagtaac
ttccattaccacgaactaaagccaatagtttttgtgggctcgctggaatacctgcgaaga
gagtgggagactttacacaacttccctaaggtctccatcttacctggtacgccattaagt
cgggcagatttaagggctgtcaacatcaacctctgcgacatgtgcgtaatactgtcagcc
aatcagaacaatatcgaagatgcctcactgcaggataaggaatgcatcttggcatcactc
aacatcaaatctatgcagtttgatgacagcattggggtcttacaggctaattcccaaggt
ttcacgcctcctggaatggaccggtcatctccagacagcagtccagtacatggctttgtg
cgtcaggcttccgtcaccaccggagccaacatccccatcatcacagaactagtgaacgac
tccaacgttcagttcctggaccaagacgatgatgacgacccagacacggagctgtacctc
actcagccctttgcctgcggcactgccttcgctgtcagtgtactcgactccctgatgagc
gcgacatacttcaatgataacatcctcacactgattcggacgctggtcacagggggtgcc
acaccagagctggaggccctgttggctgaggagaacgctctcagaggaggatacagcaca
ccgcagacactggccaacagagacaggtgtcgcgttgcccagctagccctctacgacggg
ccttttgcagacttgggggatggcggctgctatggggacttattctgtaaagcgctgaag
acgtacaacatgctgtgctttggaatctacagattaagagacgctcacatcaatggaccg
agcccgtgcacaaaacgatatgtgatcacgaacccaccgtatgagtttgagctggtgccc
tcagacctgatcttctgcctgatgcagttcgaccacaacgcaggccagtcccgaacaaac
ttgtcccactcttcccactcctcccattcctccagcaaaaagagctcctccgtccactcc
atcccggcctccaaccggcagaaccgcagcagtaagaccagggagccccgcgacaaacag
aaaaaagaaatggtttacagatga
DBGET
integrated database retrieval system
