Trematomus bernacchii (emerald rockcod): 117499576 Help Entry 117499576         CDS       T09643                                  Symbol col17a1b Name (RefSeq) collagen alpha-1(XVII) chain   KO K07603   collagen type XVII alpha Organism tben  Trematomus bernacchii (emerald rockcod) Pathway tben04382   Cornified envelope formation Brite KEGG Orthology (KO) [BR:tben00001]  09150 Organismal Systems   09158 Development and regeneration    04382 Cornified envelope formation     117499576 (col17a1b) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen Motif Other DBs NCBI-GeneID:  117499576 NCBI-ProteinID:  XP_034007946 LinkDB All DBs Position Unknown AA seq 1890 aa AA seqDB search MDELTRQIDFSGGLSGERVVTETVTSTTRLSSLPPKGTSGSNHRNMSSGAGGLGLEKNVL TQNSSGTYFSSSSGGVNASSFSSSSGVYLGGDSSGGDGGGIFIDGEGYGRRGGGGGGGGG GGGTGGGTGGGGGGGGGGGKGGSYLVSSVSKVRSSSSGGTRRTAGSSGGLSPSSRERKVT SSRSGGYDGSSSANSSPEFARKDYGVYCSSTQRGRSESRESEIRARLQSASPSASRWTEL DDVKKLLKGRSCSVSPTRSNASITLPVPKKASVETKTISVASQSGSTSFGSGVRSTGFHT IDTSGFYDTGLTSGRVDTGVNSSQYDVTVTSDHYDTGVKSVPYAVGLKSGPFDTGVKSGQ YDMSLKSGQYDTGIRSAQYDTSVRSAQYDTSVRSAQYDTSVRSGQYDGSLRSGQYDGSVR SGQYDTLDATLPTFSWCTTTLPSAATTVMAANTSSYAYQAGNNNMAGGTAAVGLTSPSSL SVYGFQNNLAPTSSTVLTTSGGNVTTNLGGYGVQKNLSNGGGVASTGVSATTRTQVDDSY KRDYKRLISDKENVTAKRDTDMLIMAKDSGKQFTTSSVQMSGGSLSGDSMKKEKLISSYV ETAPLKTESGNSYYGSSGTSGVVMKDKSTYAEIDRDSGIFGGGGGFCCCSDACCSWWKWL LGLLLLSLLLLGLLFGLIALAEDVRKLKSRVGTLESESSARTSRLSGTSNNINVFGATGA GAAGAGAVGAAAGAGAAGGGAVGAAAGAGAAGGGAGGGGTSHTDNTLYMGAGGGAGSSGS KTQIGVAAGAGGSTGGGGNGLDVSIGGGSAGASGATGASAGGAGTSVSGRGGSTGGGTGG GTGGGTGGGTGGGTGGGAGGSGTRLSGGSSSGTSFTGSSGSSGSSGTVLSGSAGSTDSGF SGGAGGSAGTGHSGGAAFGTGVSGGHMEAAALQIMVQQMLRTEMHSQSYRAFLVSSVQGE RGLPGPKGDSGFPGIPGAPGSMGHAGPEGQKGQKGGQGDHGLDGAPGVRGREGQLGPRGD TGPAGFGAKGERGSPGEPGSVGAKGSSGIPGLLGAPGQPGSQGFRGETGPHGPKGDTGGT GARGVKGDGGIPGLQGLAGEKGSTGLAGADGLKGSRGDQGPAGIPGLRGPAGPPGDSAHA GQPGLQGPPGIPGNPGSPGAKGEAGDAGRIINAAGSTSIAIPGPPGPSGPPGPAGRPGLS GPIGPAGQPGAKGDRGFRGAQGEQGITARTSETLTSSHVSASGGSAISGPPGPPGPPGRA GDSRPGPPGPPGPTGYGRPGPKGDRGEPGFSSGSGTLHTGQPGPPGAVGPRGSSGSPGPR GYQGEAGQPGVPGRSGSSERVSSYGGGLGTPGPPGPPGLPGIQGIKGNTGATGSPGSSRG SISVTSGPPGPAGPPGPPGQTGSFSSSTEMRQYISEYLSRSTQSAGRGLPGPPGPPGTPG SFSGSIEDISTRMIAYMQRSGSGLSIGVQGPPGPPGPPGHGSGSLTVSGLISMLQREDVR RYLSGPPGPQGPPGQPGTSGGAGGFSGSFSVEEIATYVFKIMNDRGIARGPPGPPGPAGP SVAVGSSFSQASIDYSALVRNSDFRSWVTSAVQQGISGSPGIPGQPGPPGAQGPPGVSTA TVYGAGTGGSGYSLEDIQRYLQGSGFRGLPGPPGPQGPAGPSGGHSGSVSYSGNFPRESI RAEVQEYLTSDNVRRAIIGPPGPQGPMGPRGERGESGYGQGYSQSQNYAQSDSRIGSEYR NIDLSNLDYSSVAIQVSDLIKSKGLLQEYLVEGPWRAHVRAIQGPPGPPGPSGPPGQSRV IGAYGNVTADLMQFFRTYGTIAGPPGENGPRGERGHPGPRGERGDPGRPGLSGLPGAYTV QVPHRVQKRDAGNEMVARRRQKLRRHAGSG NT seq 5673 nt NT seq  +upstreamnt  +downstreamnt atggacgagttaacaagacagatcgacttctcaggaggcttgtcaggagaaagggttgtg acagaaacagtaacctccaccaccagactgtcttctctgccaccaaagggaaccagcgga tcaaatcacaggaatatgtccagcggtgctggagggctgggcttggagaagaatgtctta acccagaacagcagtggaacttatttctcctcatcctctggaggagtgaacgccagcagc ttcagctcctcctcgggagtttacctcgggggagactcctcgggaggtgatggaggaggg atcttcatagacggagaggggtatggaagaagaggaggaggaggaggagggggaggagga gggggaggaactggaggaggaactggaggaggtggaggaggtggaggaggtggaggcaaa ggcggcagttatctcgtgagctcggtgtcaaaggtcaggtcgagctcgtctggcggtacc aggagaactgcaggctcatcaggaggtctgtcgccatcttcccgggagaggaaggtcaca tccagccgctcaggaggttatgatggaagttccagcgctaattcctccccagagtttgca cgcaaagattatggagtctattgctccagcacccaaagagggaggagcgaaagcagagag agcgagatcagagccagattacagagcgcctctcccagtgccagcagatggacggagctg gacgacgtgaagaagcttctgaaggggcgctcctgcagcgtcagccccactcgctccaac gcctccatcaccctgccggtccctaaaaaggccagcgtggaaaccaagactatctcagtg gcctctcagtcgggttcaacttcctttggctctggtgttagatcaaccgggttccacacc attgatacatcaggcttttatgacaccggtctgacatccgggcgggttgatactggtgta aactcaagccagtatgatgtcaccgtgacatcagaccactatgatactggtgtgaaatct gtcccgtatgctgttggtttaaaatcaggaccgtttgatactggtgtgaagtcaggacag tacgacatgagtttgaagtcagggcagtatgataccggcataagatcagcccagtatgat actagtgtcagatcagcccaatatgatactagtgtgagatcagcccaatatgatactagt gtgagatcaggccagtatgatggtagtctgagatcaggccagtatgatggcagtgtgaga tcaggccagtatgacacactggacgccacacttcctactttctcctggtgcaccaccacg ctgccctccgccgccaccacggtgatggctgccaacaccagcagctacgcctaccaggcc gggaacaacaacatggctggaggaaccgctgcagttggtctcacctcaccctcctccctc tccgtttacggcttccagaataacctggctcccacctcttccactgtgctcaccaccagt ggaggaaacgtgactactaacctaggaggttatggcgttcagaagaatttgtcaaatggt gggggtgtcgccagcactggagtctctgcaaccactagaacccaagttgatgattcctat aagagagactataagagactgatctctgacaaggagaacgtgacggccaagagagacaca gacatgctgatcatggctaaagacagcgggaagcagttcaccaccagcagtgttcagatg agtggagggtcgctgtcaggagactcgatgaagaaagagaagcttatttcaagctacgtt gagacggcgccactgaagacagagagtggcaactcttactatgggtcatctgggacgtct ggagttgtgatgaaagacaaatcaacctatgcagagatcgaccgggacagcgggatcttc ggaggcggaggaggattctgctgctgctcggacgcgtgttgctcctggtggaaatggctg ctgggtcttctcctcctctccctgctcctgctgggactcttgtttgggctcattgcactg gctgaggacgtgagaaagctgaagagtcgagtgggtacgctggaatctgagtcctccgct cgtaccagccggctgtcaggaacttcaaataacatcaacgtcttcggagccactggagct ggagctgcaggagctggagcggttggagctgcagctggagctggtgctgctggaggtgga gcggttggagctgcagctggagctggtgctgctggaggtggtgcaggtggaggaggtacc tcccacaccgacaacacgctatatatgggggctggaggtggagctggaagttcgggatcc aaaacacaaatcggtgttgcagctggtgctggtggctctactggtggaggtggaaacggc cttgacgtcagcattggtggtggttctgctggagccagtggagcgactggggcaagtgct ggtggtgccggtaccagcgtcagtggcagaggtggcagtactggtggcggtactggtggc ggtactggtggcggtactggtggcggtactggtggcggtactggtgggggtgctggtggt tctggtacccgtctcagtggtggaagttcttctggaacctctttcactggctcttctggt agttctggtagttctggtaccgttctcagtggcagtgccggcagcaccgattctggtttc agtggcggtgccggcggttctgctggtaccggccacagtggcggcgctgccttcgggacc ggagtgagcggaggacacatggaagctgccgctctgcagatcatggtccagcagatgtta agaactgaaatgcattcccagtcatacagagcttttctagtgtcgtcagtgcagggagag agaggactgcctggacctaaaggagactctggtttccctggaattccaggtgctccgggc tccatgggacatgcaggccctgagggtcagaaaggacagaaaggaggtcaaggtgatcat gggctggatggggcacctggcgtcaggggtcgcgagggccagttgggccccagaggtgat acaggacctgcaggctttggagcgaaaggtgaaagaggttctcccggggaacctgggtct gtcggtgctaaaggctcaagtggaattcctggtcttcttggagcaccaggtcaaccaggt tctcagggtttccgtggcgagacaggaccacatgggcctaaaggtgacactggtggtaca ggtgccagaggtgtgaaaggtgatggtggtataccgggtctgcaagggctggctggagag aaaggatcaacggggttggctggagctgatggattgaaaggatcaagaggtgaccaaggg cctgcaggtattcctggactcaggggtcctgctgggcctcctggagattctgcacatgca ggacaacctgggcttcaaggaccaccagggataccagggaacccagggagtcccggcgct aaaggggaagcaggtgacgctggaagaatcatcaacgcagctggatccacttctattgcc atcccaggaccccccgggccttctggtccccccggccctgctggacgtccaggattatca ggtccaattggccctgctggccaacctggtgctaaaggtgacagaggatttaggggcgcg cagggagaacaaggaataacagcgagaacatctgaaaccttgacctcaagccatgttagc gccagtggaggatcagcaatatctggcccccccggcccacctggtccacctggacgtgca ggagattcaagaccaggaccgcccgggcctccaggtccaacaggttatggaagaccaggg cctaaaggagacagaggggagcccggcttttcatccggctcaggaacacttcatactgga cagccaggaccacctggggctgtcgggcctagaggatcatcaggttctcctggaccaaga ggataccaaggtgaagcagggcagccaggtgtgccggggagatcagggagctcagagaga gtatcctcttatggtggaggactcgggacccctggacctccaggtccgccaggacttcct ggaatacagggaatcaaagggaacactggagctactggtagtcctggctcttcgagaggc tccatctcagtcacctcaggcccccccggccctgcaggtcctcccggccctccaggtcag acgggctccttctcttcttctactgagatgcggcagtacatctctgaatatctgagtaga agcacacagtcggctggccgcgggctcccgggcccccctgggcctccaggaacccctgga tccttctcaggctcaatcgaggacatctccactcgtatgatcgcatacatgcaacgttcg ggctcagggctcagcatcggggttcagggtcctccgggaccacccggcccccctggacac ggctctggttccctgacggtcagtgggctcatctccatgcttcagagagaggatgtgagg agatacctgtccggaccaccaggcccacaaggccccccgggtcaaccagggacatcagga ggagcaggaggattttcaggcagtttctctgtggaggagatagccacatacgtcttcaag atcatgaatgacagagggattgcgagaggtccccccggaccccccggtcctgctgggccg tctgttgctgtgggctcgagcttctctcaggcttcgattgactattctgctctagtgagg aattcagacttccgctcttgggttacctctgccgtacaacaaggtatttctggttccccg ggcatcccaggacagcctggccctcctggcgctcaggggccgccgggggtctccaccgcc accgtgtacggggccgggactggggggagtggctacagcctggaggacattcagcgttac ctgcagggttctggcttcagaggtctccccggccctcctggtccacagggaccagcggga ccatcaggcggtcactccggatcggtttcctacagtggaaacttccctcgggagagcatc cgcgctgaagtccaggagtatctgaccagtgacaatgttcgtcgtgccatcatcggacct ccggggcctcaggggccgatgggaccgaggggagagcgaggagagtcaggctacggccag ggctatagccagagccagaactacgctcagagtgactctcgaatcggctctgagtacaga aacatcgatctcagcaacctggactactccagcgtcgccatccaggtttcagacctcatc aagagtaaaggtctgctgcaggagtatctggttgagggtccttggagggcgcatgttcga gcgattcaaggccctcctggtcctcctggcccctccggaccaccgggccagagccgcgtc atcggggcctacggcaacgtcacagcggacctcatgcagttcttcagaacctatggcacc atcgcaggccctccaggagagaatggaccgaggggtgagagggggcatccaggacccagg ggagagagaggtgatcctgggcgcccaggtttatcaggactaccaggggcatacactgtc caagttccacacagggtgcagaagagggatgcaggcaatgaaatggttgctcgtcgtcgt cagaagcttcgccgtcacgcaggcagcggttaa

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