Trematomus bernacchii (emerald rockcod): 117499922
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Entry
117499922 CDS
T09643
Symbol
cfap43
Name
(RefSeq) cilia- and flagella-associated protein 43 isoform X1
KO
K24223
cilia- and flagella-associated protein 43
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
tben03037
]
117499922 (cfap43)
Cilium and associated proteins [BR:
tben03037
]
Motile cilia and associated proteins
Tether/Tether head (T/TH) complex
117499922 (cfap43)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
WD40
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
CFAP43_N
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
HTH_30
Motif
Other DBs
NCBI-GeneID:
117499922
NCBI-ProteinID:
XP_034008505
LinkDB
All DBs
Position
Unknown
AA seq
1651 aa
AA seq
DB search
MDDIGSLDVRWIQGFTNKCIEFVDNKTVCYTCGSHICFLNLETKKQSVLQSPGRGIGALT
ANSKNGTFAFSEEKLSPSIFVYSFPELQLKNELKGAAQTDYKSLTLSESGPYLGCCSSFP
DYTITVWNWEIAEPLCTQPQAGQDVIYLVFNPLNWLQLCALGTTTLTVWNIEKSDSFHVL
KPSVIELPAKDGSFVERLVPPSHTVSDKLPYFGLEMPPTAISGLKGNKAESIVTKLCTKA
RVTPTAICWTATSELYVGCEESFLLLVDPDSLSASVLFNPTTADATPELRHGNFQGLTLD
KNGLIAVGKESVVHCLQIKGSQIDITHTWQLEGPVTTVMYSPDHEILLLSSNTGQIYVLN
PTESDNFLKVLDVLCGNFVAAHLSHTGKNICVSVRDSGELQLWSADGTILGSLSLQTEVT
SMACCPIAHYAAVGTASGNVLFIDLNMEHQPRLVHQVHLYPTPVDHLVFDQEGHYLLTTA
SDSHIYVLDAKPSNRFSVIGYTVVPGPILSLSTQCVRDCEQVKVLALCNGQELTVFSLPA
KNLAGPDCLDRHGCLSAHILKVSRYEVPHPLDSCVLGVSEVFANCREKKTLQRFQLPQDT
ESLSSQQVVQLEPEQEVGGHPLGPASLALSPHQLWLASVGRDGLLRIRETANMEQCLELQ
SHSRHLGGVQSVSFSADSQTLLTAGFRDGSLLCTDLRFKGVDADKVNRAAQYSQSLDNFL
KNIFRTENRILINMPEWGQGFRTGAEKTEESEVSGGVDALDVTEQDESYSSLLSAPPSHP
TWLESRREAVIKDDNEQYSEAKSNMKKTFKELRDNIQEMMRENENLPDLERLPQKEFNLF
TEEQKRLGAMVEQEVKRVRNEVEWEILANCYLRDVLKRECWDSMKVKGKAIKAFYSEHEV
KNYPLRERTEKEVEDLLRVENIRKLEKAACTQSSLKKSSDTTSPKEGEPGKESLEAETPV
VTGSFSAQLGYSNPYIYDQFRLQTTEQRINQIILLQDVIYRIKTAFNTDFEAVHRQKVQE
LNRVKDRNTNIRDITLELDLKDTLWEPSLTSSERPEGLLTVDDSEIKAERYLTPEQKKEK
EKKKLEEQKRLAAKDDNDKDRALDDMMEGVLEVKKEDILKIEIPPPEFVLTKPEIQWNEE
EKKVYKDYEKKTKELTEEKEKYKKSLETEMKKLQASNKEATERFDETLTKLFEKKVKCEM
AIYQEELKNTYLVYSVLIEDEMRNRELELKLKLEKTLAHKDELVEEVKRHEEDVELFQES
YESVVAEDKVLDKEFSKEFFDVPNHVVDLLYKLFKRRPRVQKMRTETDNNLSLFKEQRLC
GSMAPDALGKMLKAMEELDAPENIPEAVSQPVWERFCLVRNTKVKSEHKVKVKAFTFAEM
QAFLHKRRYEVHATQQEIKNLSEGLESLHEEKNRSLTDIMVQVLLKQGQVEVYTTELTPD
YTDCVHLHRTVVEDLNRTIRTLGDQKIASMVECKDFRKGIIRQQWEHRMLTMQIEDFNNK
ARDVQMLRLSEEQQDYLNKTDHGSRVSHQVLILEKTVAFQEKTHRQSVQHRIKKIEQLKR
QAKMKAEKNTTVEEKLPNMQVTMAETSHIYGGLVSEANLAAREQKRYQEIVQRKNLEEFA
RAQGEELAFLWAEVERLRMKSFPSLDQLKHN
NT seq
4956 nt
NT seq
+upstream
nt +downstream
nt
atggatgacattggaagtttagatgtcaggtggatacaaggttttacaaacaaatgtata
gagtttgtcgacaacaagacagtatgttatacatgtgggagtcatatttgtttcctcaac
ctggagacaaaaaagcaaagtgtgcttcagagtcctggcagaggcattggtgccttgaca
gctaatagcaaaaatggaacttttgctttctctgaagaaaagctatccccgtctatattt
gtgtactcttttccagagttacagttgaagaatgaattaaaaggagctgcacaaactgac
tacaaatctctgacattaagtgaaagcggtccttatttgggatgctgttcctcttttcca
gactacaccataacagtgtggaactgggaaattgctgagccactttgtacacaaccgcaa
gctgggcaggatgtcatttatttggtgttcaaccctctgaattggctccagctctgtgct
ttgggcactacaaccctcactgtctggaatattgagaagagtgacagctttcatgtcctc
aaaccaagtgtgatagagcttccagcaaaggatggttcctttgttgagagattggtgccc
ccctctcatactgtcagtgacaaactgccctattttggtctggagatgcctccaacagcc
atctcagggctcaagggaaacaaagcagaaagcattgtgactaaactgtgcaccaaagcc
agagtcactcctactgccatctgctggacagccacatcagagctttatgtaggctgtgag
gaaagctttctgctccttgttgacccagacagcctctctgcctcagtcctcttcaacccc
acaactgctgatgccacacctgaactgagacatggcaactttcaaggtttaacccttgac
aagaatggtttgattgctgtcggaaaggagagtgttgtgcactgtctgcaaatcaaaggg
tctcaaatcgacatcacacatacgtggcaattagaaggacctgtcacaactgtgatgtac
tcccctgaccatgagatattacttttatcttctaatacagggcaaatctatgtgttgaac
ccaactgagtcggacaactttttgaaggtcctggatgttctctgcggaaactttgtggct
gcgcatttgtcacacactggcaagaacatttgtgtgtcggtgagagactctggagaactg
cagctgtggtctgcagatggcactatcctcggttctctgtcccttcaaactgaggtaaca
agcatggcctgctgtcctattgcgcattatgcagctgttggaacagcttcaggaaatgtc
ctcttcattgacctgaacatggagcatcagcctcgcctggtgcaccaggttcatctgtac
cctactcctgtggatcacctagtttttgatcaagaggggcactaccttcttaccactgcc
tcagattcacacatctatgtacttgatgcaaaaccatcaaatagattttcagtcatagga
tacacagttgttcctggacccattttgtcactttccactcagtgcgtcagagattgtgag
caggtgaaggttcttgcactgtgcaatggacaggagctcacagtgttctctctgccagcc
aagaaccttgcaggtccagattgtttagaccggcatggttgtctatccgctcacatcctc
aaagtatcccgatacgaagtgccccatcctcttgattcctgtgttctgggagtcagtgag
gtctttgctaactgccgcgagaagaaaactcttcagcgatttcaacttccacaggacaca
gagagtctctccagtcaacaggtggtccagcttgaaccagagcaggaagtggggggccac
cctctgggccccgcctctctcgctttgtctcctcaccagctgtggctggcttctgtgggc
cgagatggcctcctacgcatcagagaaactgctaacatggagcagtgccttgaactgcaa
agtcactcaaggcatctgggtggagttcagagcgtgtccttctctgctgacagccagact
ctcctcactgcgggctttagagacggctccctcctgtgcaccgatctcaggtttaaaggt
gtggacgctgataaggtgaatagagctgctcagtacagtcagtctttggataatttcttg
aaaaatatattcagaacagagaatcgcatcctcatcaacatgcctgagtggggtcaaggg
tttcgcactggtgctgaaaaaacagaggaaagtgaggtcagtggtggggtagatgctttg
gatgtgacggagcaggatgagagttatagcagcctgctgtctgctccaccttcacacccc
acctggctggaaagcaggcgagaagcggttataaaagatgacaatgagcaatattctgag
gcaaagagcaacatgaagaaaactttcaaagagttacgtgacaatatccaggagatgatg
cgtgaaaatgaaaacctcccggatctcgagcgtttgccacaaaaggagttcaacctgttt
acagaggagcagaagagactgggggccatggtggagcaggaagttaaacgggtgaggaat
gaagtcgaatgggagattctagcaaactgttacctccgtgatgttctgaagagagaatgc
tgggattcaatgaaggtcaaaggcaaagccattaaggccttttactctgaacatgaggtg
aagaactaccctctgagagagcggacagagaaagaggtggaggacctgctcagggtggag
aacatcaggaagcttgaaaaggctgcttgcactcagagcagcctgaagaagagctccgac
acaaccagcccgaaggagggagagccggggaaagaaagcctcgaggcagagactcctgtc
gtaacgggaagcttctccgctcagttaggatattcaaatccgtacatctacgatcagttc
cgcctgcaaaccacagagcagaggatcaaccagatcattctgctacaggacgtgatttat
cgcatcaagacggctttcaacacggactttgaggccgtgcacaggcagaaggtgcaggag
ctgaaccgagtgaaggacaggaacacgaacatcagggacatcacgctggagttggacctg
aaggacacgctgtgggagcccagcctgaccagcagcgagcggccggaggggctgctcacc
gtggacgactccgagataaaagcagaaaggtacctcaccccagaacagaaaaaggagaag
gagaagaagaagttggaagagcaaaaacgtttggctgccaaagacgataatgacaaagac
agagctctcgatgacatgatggagggagtgctggaagtcaaaaaggaggacatcttgaaa
atagaaatacctccgcctgagtttgttttgaccaaacccgaaatccaatggaatgaggag
gagaaaaaagtctataaagactatgagaagaaaaccaaagaactgactgaggagaaggag
aaatacaaaaagtcattggaaactgaaatgaaaaaactgcaggcatccaacaaggaagcg
accgaaaggtttgatgaaactttgacaaagttgtttgagaagaaagtaaaatgtgaaatg
gctatatatcaggaagagctcaagaatacttatctggtttattcggtcctcatagaagac
gaaatgagaaatcgagagctggagctcaagctcaaacttgaaaaaactttggcgcacaag
gatgagcttgtggaggaggtaaagagacatgaggaagacgtagaattgtttcaggagtct
tatgaaagcgttgtagctgaggataaagttcttgacaaagaattcagtaaagagttcttc
gatgtaccgaaccatgtggttgaccttttatacaagttattcaagcgtagacccagggtt
caaaagatgaggacagagaccgacaacaacttgagtttgttcaaagagcagcgtctctgc
ggctctatggctccagatgcactcggcaaaatgctgaaggccatggaggagctggatgct
ccggagaatattccagaagccgtgagccaaccagtctgggagaggttctgccttgtccgc
aacacaaaagtaaaaagtgagcacaaggtaaaagtaaaagcttttactttcgccgagatg
caggcgttccttcacaagaggagatatgaggttcacgccactcaacaggaaatcaaaaat
ctatccgaaggactggaaagtctgcatgaggagaagaaccgctccctgacggacatcatg
gtgcaggtgctgctcaaacagggccaggtggaggtgtacaccacagagctgacccccgac
tacaccgactgtgtgcatctccacaggaccgtagtggaggacctcaacagaaccatcagg
acactgggagatcagaagattgcctccatggtggagtgtaaagatttccgtaaggggatc
atcaggcagcagtgggagcacaggatgttgacgatgcagatagaagacttcaacaacaag
gcgagagacgtccagatgttacggctttctgaggagcaacaggactatctcaacaagaca
gatcatggcagtcgtgtgtcgcaccaggttcttattctggaaaaaactgtagctttccag
gaaaagactcatcgccagagtgtgcagcatcgcataaaaaagattgaacagcttaaaagg
caggcaaaaatgaaagctgagaagaacacaactgtagaagagaagctacccaatatgcag
gtgacgatggcagagacgagccacatctacggaggactagtttcagaggcaaacctggca
gctagagaacagaagcgctaccaggaaatcgttcagaggaagaacttggaggagtttgcc
cgagcgcagggggaggagctggcgttcctctgggccgaggtcgagcgtttgaggatgaag
agctttccttcacttgatcagctgaaacacaactga
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integrated database retrieval system
