Trematomus bernacchii (emerald rockcod): 117500134
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Entry
117500134 CDS
T09643
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117500134 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117500134 (ndc1)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117500134 (ndc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ndc1_Nup
DUF6825
UNC-79
Motif
Other DBs
NCBI-GeneID:
117500134
NCBI-ProteinID:
XP_034008727
LinkDB
All DBs
Position
Unknown
AA seq
670 aa
AA seq
DB search
MFSAEQSCWFVRKVICWRAVASIAWAVLLLPSITAVFVLLSRFSLLHPIQTVSECLSFLT
SASAIFSFILLCGVIIMVGFLNLEYYTVIPTIACSKIALLGQLLHPRQFVNSLAHCIMGI
IVAWCCAIAIGGRYETIAYPCTPDDGVDSSHQMCLNEHHFILLLAGAFVGLSHSMLGVIY
NMNYVPFLTVQQYKYLRFKGSLPSLVKCSATQALYSVRNYIVVYFFLGYIPKAWICKTLN
LHLNSSVHPLDSIAGLLDLNLLYQLWVSAGFLLLTWHVTLLLFRIFVTEVYSFPVQSSFT
EDAHQCLPKVITGKQPMVLKFLALQDLALLSQHSPLRRSEVFSLSQPGGHPHNWNAISKE
CLSLLNDLTQRLIAYHDTVATNGRAKSLSTGSERKTSSETSSTEDLMSPRPTFLMKTPAS
VFARSIVGSSQSPLTAPFTSPDLNSPFASPALRRLTAPADPCSPWFGTVQSPHIMRRVPK
LWSTPTDSQVNGSPPASPASVPSPKQEPSKPSLLAQFLQNRKEQVKHFLAKRVLIMYLFN
KLPEASSQALFADSQAHIWALEGLSYLVQASFSEDQFGVVQTALPSILGCMLVLQEAVDR
HFKLPHASSKPVRSASSLGDSTHKTLRFALRATLKTAIYRITTTFGNHLSAVQMSAEHRK
RLQQFLENKE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgttttctgctgagcaaagctgttggtttgtccgcaaggtgatttgctggagagctgtg
gcgagtatcgcttgggctgtcctgttgttgccctccatcacagcagtgtttgtgctcctc
agcaggttcagtctgcttcaccccatccagacagtatcagaatgtctgtccttcttaacg
agtgcaagtgccatcttctccttcatcctgctgtgtggagtcatcatcatggtggggttc
ctcaacctggaatattatacagtcatcccaacgattgcatgctcgaaaatcgccctgttg
ggtcagctgctccaccctcgtcagttcgtcaactccctggcacactgcatcatgggaata
atcgtggcttggtgttgtgccatcgccatcgggggcagatatgaaacgatcgcctacccc
tgcacaccggatgatggtgtcgacagttcccatcagatgtgtctgaacgagcatcacttc
atccttctgctggctggagcctttgttggactatctcacagtatgctgggtgtgatctac
aacatgaactatgtcccttttctcactgttcagcaatacaaataccttcgctttaaggga
tccctaccttcgttggtgaagtgcagcgccactcaggccctttactctgtcaggaactac
attgttgtgtatttctttttgggatacattccaaaagcatggatttgtaaaacactgaat
ctgcatttgaacagctctgtccaccctcttgacagcatagctggactgctggacctcaac
ctgctgtaccagctgtgggtcagtgccggcttcctcctcctcacatggcacgtcaccctg
ctgctctttaggatctttgtcactgaggtgtacagttttcctgtgcagtcttcttttacc
gaggatgcccatcagtgtcttcctaaagttattaccggcaagcagcccatggtattaaag
tttctagctctgcaggaccttgctctgctctctcaacactctccattgagacgctcggag
gtcttcagtctgagtcagccaggtggccatcctcataactggaacgccatcagtaaggag
tgtctgtctcttctgaatgatctgacccagagactcatagcctatcatgacactgtagca
accaatggccgggccaaatccctttctactgggagtgagaggaagacttcatctgagaca
tcaagtacagaagatctgatgagcccgaggcccacgtttctgatgaaaaccccagcgtcg
gtgtttgctcgctccattgtaggcagctcacagagccctctgacagcgcccttcactagt
cctgacctgaacagcccttttgcttctcccgctctgcggcgtctgactgctcctgcggac
ccgtgttccccgtggttcggcacagtgcagagcccccacatcatgaggagagtcccaaaa
ctctggtccacccccacagattcacaagtcaatggaagtcccccagcatcccctgcctca
gttcccagtcccaaacaggaaccgtccaaaccaagtctcctggctcagttcctccaaaac
agaaaagaacaggttaaacatttcttggcaaagcgcgtgctgataatgtatttgtttaac
aagcttccagaagcctccagtcaggctctgtttgcagacagccaggctcacatctgggct
ttagaagggctgtcgtaccttgttcaagcctccttctcagaagaccagtttggggtcgta
cagactgcattacccagcattctcgggtgtatgctcgtcttacaagaggcagtagatcgg
cacttcaagctgcctcacgcctccagtaagcccgtgcggtcggccagcagcctgggagac
tccactcacaaaacactgcgctttgccctcagagccactctcaagactgccatctacagg
ataactactacttttggaaatcacttaagtgctgttcagatgtctgcagagcaccggaaa
cgattgcagcagttcctggaaaacaaggagtaa
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