Trematomus bernacchii (emerald rockcod): 117500232 Help Entry 117500232         CDS       T09643                                  Symbol copa Name (RefSeq) coatomer subunit alpha   KO K05236   coatomer subunit alpha Organism tben  Trematomus bernacchii (emerald rockcod) Brite KEGG Orthology (KO) [BR:tben00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:tben04131]     117500232 (copa)   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:tben04147]     117500232 (copa) Membrane trafficking [BR:tben04131]  Endoplasmic reticulum (ER) - Golgi transport   Retrieval pathways    Coat protein complex I (COP-I)     117500232 (copa) Exosome [BR:tben04147]  Exosomal proteins   Exosomal proteins of other body fluids (saliva and urine)    117500232 (copa)   Exosomal proteins of bladder cancer cells    117500232 (copa) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd WD40_CDC20-Fz WDR55 TPR_COPA_B Beta-prop_EML_2 Beta-prop_WDR36-Utp21_1st EIF3I Beta-prop_WDR90_POC16_2nd WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_WDR75_1st WD40_RFWD3 ANAPC4_WD40 WD40_MABP1-WDR62_1st WD40_MABP1-WDR62_2nd Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_Aladin Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_RIG_2nd Motif Other DBs NCBI-GeneID:  117500232 NCBI-ProteinID:  XP_034008922 LinkDB All DBs Position Unknown AA seq 1220 aa AA seqDB search MLTKFETKSARVKGLSFHPKRPWVLASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHDYPWILSASDDQTIRIW NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVETD VRGISGVDLFGASDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH PNLNLFAAGHDSGMIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSG SKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYSIPKESDSQNPDAPEGKRSSGLTAVW VARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDADGVTLFDVQQK RSLATVKIAKVKYVVWSADTSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV FIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGNSVYCLDRECRPRVLTIDPTEYRFK LALVNRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEV ALEAAKVLDERTCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLTKLRKMM KIAEIRKDMSGHYQAALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEAEALKESFDP EKETVPEVDPNAQLLQPSPPINPLDTNWPLLTVSKGFFEGAISAKGKAGQMAADADTEAP GGEGWGDDAELQLDEDGFMDAQDGIGEEGVKEEGGGWEVEEDLDLPPELDLPAAGGGAED GFFVPPTKGMSPTQIWCNNSQLPVDHILAGSFETAMRLLHDQVGVVSFEAYKPLFMQTLS RGRTCHLGLPSLPCLRGNPQRNWKDCGAKQGLPAVGLRLSDLIARLQQCYQLTTSGRFEE AVERFRAILLSVPLLVVDNKQEIAEAQQLITICREYIVGLTMETERKKLPKDSLDQQKRL CEMAAYFTHCNLQPVHMVLVLRTALNLFFKLRNFKTAASFARRLLELGPKPDVAQQTRKI LAACEKTLTDAHQLNYDPHNPFDLCAASFVPLYRGRPVEKCPLSGACYCPPYKGQICRVT QVTEIGKDVIGLRVSPLQFR NT seq 3663 nt NT seq  +upstreamnt  +downstreamnt atgttaaccaaattcgagacgaagtcggcccgtgtcaaaggcctgagtttccatcctaag aggccatgggttcttgcaagtttgcacaacggagtcatccagctgtgggactatcggatg tgcacactgattgacaagtttgacgagcatgatggccccgtcagaggaattgattttcac aaacagcagcctctgtttgtgtctggaggagatgactacaaaattaaggtgtggaactac aagctgagacgctgcctcttcactctgcttgggcacctggactacatcagaaccactttc ttccaccatgactacccctggattctgagcgcctcagatgaccagaccattcgcatctgg aactggcagtccaggacctgcgtctgtgtgctgaccggccataaccactatgtgatgtgc gcccagttccacccctctgaggacctggtggtgtccgccagtctggatcagaccgtgcga gtgtgggatatttccggtctgaggaagaagaacctgtctcccggcgctgtggagacggac gtgcgcggcatctctggtgtcgacttgttcggtgcctcggatgctgttgtcaagcatgtt ctagagggtcacgaccgtggggtcaactgggctgccttccaccccaccatgcccctcatc gtgtctggcgctgacgacaggcaggtcaagatctggaggatgaatgaatccaaggcctgg gagctggatacgtgccgcggtcactacaacaacgtgtcctgcgccgtcttccacccgcgc caggagctcatcctgtccaactccgaggacaagagcatccgggtgtgggacatgtccaag aggaccggggtgcagaccttccgtcgggaccacgatcgcttctgggtgctgggggctcac cccaacctcaacctgttcgctgctggtcatgacagcggtatgatcgtgttcaagctggag cgcgagcgtccggcgtacgctgtgcacggcaacatgctgtactacgtgaaggaccgcttc ctccgccagctggacttcaacagcagcaaggacactgctgtcatgcagctccgcagtggg tctaagttcccggtgttcagcatgtcctacaaccccgctgagaacgctgtcctgctctgc actagggcgaccaacctggagaacagcacctacgacctttactccattcccaaagagagc gactctcagaaccccgatgcaccggaggggaagaggtcctctggtctgactgcagtctgg gtggccaggaacagatttgccgtcctggaccgtatgcactcgctgctgattaagaacctg aagaatgagatcgtaaagaaagttcaggtgccgagctgcgaggagatcttctacgccggg accggctctctgctgctgcgcgatgccgacggcgtcacgctgttcgacgtgcagcagaaa cgctctctggccaccgttaagatcgccaaggtcaagtacgtggtgtggagtgctgacacc agccacgtggctctgctggctaaacacgccatcatgatctgcaaccgtaagctggagagt ctgtgcaacattcatgagaacatccgagtgaagagtggagcctgggacgagagcggagtc ttcatctacaccacctccaaccacatcaaatacgcactcacctctggtgatcatggcatc atccggaccctggatctgcccatctatgtgacccgtgtgagaggaaacagtgtttactgc ctggacagggagtgcaggccgcgcgtcctcaccatcgaccccacagagtaccgcttcaaa ctggccctggtcaaccgcaaatatgatgaggtgctccacatggtgcgtaacgccaagctg gtgggtcagtccatcatcgcctacctgcagaagaagggctaccctgaggtggcgctgcac tttgtcaaagatgagaagacgcgcttcagcctggctctggagtgtggaaacatcgaggtg gctctggaggcagcgaaggtcctggatgagcgcacctgctgggagcgtctgggggaagcg gcgctgctgcagggtcaccaccaggtcgtggagatgtgctaccagaggaccaagaacttc gacaaactcaccttcctctatctcatcaccggaaacctgaccaagctgcgcaagatgatg aagatcgctgagatcaggaaggacatgagcggtcactaccaggcggcgctctacctgggt gatgtgagtgagagggtccgcatcctgaagaactgtggacagaagtctctggcttacctg accgctgccactcacgggctggatgaagaggcggaggcgctgaaggagtcctttgaccca gaaaaggagacggtgccagaggttgatcctaatgctcagctgctgcagccgtctccaccc atcaaccctctggacaccaactggcctctgctcactgtttctaagggcttctttgaggga gccatttcagctaaggggaaggcaggtcagatggcggctgatgcagacacggaggccccc ggaggcgaaggctggggagacgatgctgagcttcagctggatgaagatggcttcatggat gcccaggatggcataggagaggaaggcgtgaaagaggagggaggaggctgggaggtggag gaagacctggaccttcctccagagctggacctgccggctgcaggtggaggagcagaagac ggattcttcgtcccaccgacgaagggcatgagtcccacacagatctggtgcaacaactcc cagctgccagtggaccacatcctggccggctcgttcgaaactgctatgagattgctccac gaccaggtaggagttgtgagcttcgaggcctacaagccgctgttcatgcagacgctgtcc cgaggccgcacctgtcacctggggctgccttcactgccctgcctgcgtggaaacccccag aggaactggaaggactgtggggcaaagcaaggcctccctgctgtgggcctgcgcctctcc gacctcatcgcccgcctgcagcagtgctaccagctgaccacctccgggcgctttgaggag gctgtggagcgcttcagagccatcctgctgtccgttcctctgctggtggttgataacaag caggagatcgcagaggctcagcagctgatcacaatctgcagagagtacatcgtgggtctg accatggagaccgagaggaagaagttgcccaaagacagcttggatcagcagaagaggctg tgtgagatggctgcttatttcacccactgtaatctccagccagtgcacatggtgctggtg ttgcgcacagctctgaatctcttcttcaagctgcgtaacttcaagacggctgccagcttc gctcgacgcctgctcgagctggggccgaagccagatgttgcacagcagacccgcaagatt ttggcagcctgtgagaagaccctcacagatgcgcaccagttgaactacgatccccacaat ccattcgacctgtgcgctgcgtcgttcgtcccgctgtaccgtggacgtcctgttgagaag tgccctctgtctggagcctgctactgccccccgtacaaaggccagatctgcagggtcact caggtgactgagatcggtaaggatgtgatcggtctgcgtgtgagtcctcttcagtttcgt tga

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