KEGG   Trematomus bernacchii (emerald rockcod): 117500315
Entry
117500315         CDS       T09643                                 
Symbol
lig1
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tben  Trematomus bernacchii (emerald rockcod)
Pathway
tben03030  DNA replication
tben03410  Base excision repair
tben03420  Nucleotide excision repair
tben03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tben00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    117500315 (lig1)
   03410 Base excision repair
    117500315 (lig1)
   03420 Nucleotide excision repair
    117500315 (lig1)
   03430 Mismatch repair
    117500315 (lig1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tben03032]
    117500315 (lig1)
   03400 DNA repair and recombination proteins [BR:tben03400]
    117500315 (lig1)
Enzymes [BR:tben01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     117500315 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     117500315 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     117500315 (lig1)
DNA replication proteins [BR:tben03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    117500315 (lig1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     117500315 (lig1)
DNA repair and recombination proteins [BR:tben03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     117500315 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     117500315 (lig1)
   MMR (mismatch excision repair)
    Other MMR factors
     117500315 (lig1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 117500315
NCBI-ProteinID: XP_034009030
LinkDB
Position
Unknown
AA seq 1023 aa
MQRSIVSFFQPKGKDVQKKTSNEAVKKPSKSPLKVQNGVQEADSPVKKVVKRSRQILDSD
DEEAPVVKEQAAATTGDKEAPAKPEKMDDVFKAVPTPMSPPPAPATSKTPATPTTPAMTP
TTPAMTPKTPATSTSPGTPSTPNSISPSGLVKRKTARKMFPKRKLDESGSESPKDESEAK
EEPGQKHKRPRVESPGNTDEPMEEEAKEVPVEKAVTDATSPDEEEEEVEEKKEEVEKAVN
EEEEEDERVAKKSSDEKEGKAEAAETKTEAKEKKDDEKVAKKKNKKKKKEKVVEKDTQEA
EKSPESQTPRKQKDKEPPKKSPISSFFAPRKAAVKTEKSEKSEGEKQTSPERKVSAEESK
DVKGESTSGQTDYNPARPNYHPVENACWKQGQKVPYLAVARTFEKIEEESGRLRNIETLS
NLLRSVLLLSPDDLLCCVYLCLNQLGPAYLGLELGVGETVLMKAVAQATGRQLDKIKADA
QEKGDLGLVAESSRSNQRIMFQPASLTAGGVFRKLKEIGSMSGNSAMNKKIDIIKGLFVA
CRFSEARYIVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSAESRR
AWIEAKSLILKQTYCEMPNYDILIPVLLKEGIDELPNHCKLTPGVPLRPMLAHPTKGVGE
VMKRFDEAAFTCEYKYDGERAQIHILENGEVRVFSRNQEDNTTKYPDIISRIPKVKKDSV
VSCVLDAEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQ
PLCRRRALLRESFSEVEGEFVFARYIDSDNTDSIAEFLEQSVRDSCEGLMVKTLEKDATY
EIAKRSRNWLKLKKDYLDGVGDTIDLCVIGAYLGKGKRAGAYGGFLLACYDEENEEFQSV
CKIGTGFKDEDLEQHFNFLKEHVLPKPRPYYRVDQSAEPEVWLDAMQVWEVKCADLSLSP
VYKAAMGMVDPVKGISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKGDLE
DYY
NT seq 3072 nt   +upstreamnt  +downstreamnt
atgcagaggagcatcgtatccttctttcagcccaagggcaaagatgttcagaagaaaacc
tcaaatgaagcggtgaaaaaaccttccaaaagtcctctgaaggtgcagaacggcgtccag
gaagcggattcacccgtcaagaaggttgtgaaacgcagccgtcagatcctggacagcgac
gatgaagaagctccggttgttaaagagcaagctgctgctaccaccggagacaaagaagct
ccggctaaaccagaaaagatggacgatgtcttcaaggccgttcccacccccatgtctcct
ccacctgccccggccacttctaagacaccagccacccctacgaccccggctatgacccct
acgaccccggccatgacccctaagaccccggctacttctacttcgcctgggacccccagc
accccgaactccatctccccttctgggctcgttaaacgaaaaactgcgaggaagatgttc
cccaagaggaagctggatgagagcggcagtgagagcccgaaagacgagtcggaggccaag
gaggagccgggtcagaaacacaagcgaccccgtgtggagagcccagggaacaccgatgaa
cccatggaggaggaagcaaaggaagtaccagttgaaaaggccgtgaccgatgctacgagc
ccagatgaggaggaggaggaggtggaggagaagaaagaggaagtagaaaaggccgtgaac
gaggaggaggaggaggatgagcgggtggcgaaaaagagctctgatgagaaagaagggaaa
gctgaggcggcggaaacgaaaactgaagcaaaggagaagaaggatgatgagaaagttgcc
aagaagaagaataagaagaagaagaaggagaaggtggttgaaaaggacacgcaagaggca
gaaaagagcccagaaagtcaaacaccgagaaagcagaaagataaggaaccgcccaaaaag
tcccccatcagcagtttctttgctccaaggaaagccgcggtgaagacggagaaatcggag
aagagcgaaggagagaaacagacgagtccagagaggaaggtttcagcggaggagagcaaa
gacgtcaaaggggagtcaacctcaggacaaacggactacaatccggcccgaccgaactac
caccctgtggagaacgcctgctggaagcaaggccagaaagtgccgtacttggcggtggct
cgcacctttgagaagattgaagaggagtctggcaggctgaggaacatcgagacgctgtcg
aacctgctccgctccgttctgctgctttctccagatgacctgttgtgctgtgtgtacctg
tgtctgaaccagctggggcccgcctacctggggctggagctcggtgttggagagactgtg
ctgatgaaagctgttgctcaagccactgggcgacaattggacaaaatcaaggcagatgcg
caggagaaaggagatctgggtcttgtggccgagagttcccgtagcaaccagcgcataatg
ttccagccggccagtctgacggcagggggcgtgttcaggaaattgaaggaaatcggcagc
atgagtgggaactcggccatgaataagaaaatcgacatcatcaaaggcctctttgtggca
tgccgtttttccgaggcgcgctacatagtcaggtccctggctgggaagctgaggatcggc
ctggctgagcagagcgtcctatcagcactgagccaggctgtgtgcctcaccccccctgga
caaggtttccctcccgctgtgatcgatgcagggaaggggatgagcgctgagagcaggcgg
gcctggatcgaagcgaagagtctcattctcaaacagacttactgcgagatgcccaattac
gacatcctaatccccgttctgctaaaagaaggcatcgacgagctacccaatcactgcaag
ctcactccaggtgtgcctctgagacccatgttggctcaccccaccaagggtgtcggcgag
gtgatgaagaggtttgacgaggcggcgtttacctgcgagtacaaatacgacggagagcgc
gctcagatacacattctggagaacggagaggtgcgagtgttcagccgcaaccaggaagac
aacaccaccaaatacccagatatcatctctcgcattcccaaggtgaagaaggattctgtg
gtgtcctgcgtcctggacgcggaggcggtggcctgggatcgagagaagaaacagatccag
cccttccaggtcctcaccacccgaaagagaaaggacgtggacgcttcggagatcaaagtg
caagtgtgtgtgtacgcctttgacctcctctatctcaacggagagtccctggtgcggcag
ccgctgtgtcggcgtcgggctttgctgagagaaagcttctcggaggtggagggagaattt
gtgtttgcccgatacatcgactctgacaacaccgactccatcgcagagttcctggagcag
tctgtccgagactcctgcgagggtctaatggtgaagactctggagaaggatgccacctat
gaaattgctaagcgctctcgcaactggctcaagctgaagaaggactacctggacggggtg
ggggacacgatagatctgtgtgtgatcggcgcctacctgggaaaaggcaagagggcgggc
gcctatgggggcttcctgctggcctgctacgatgaggagaacgaggagtttcagtctgtg
tgcaagatcgggacaggcttcaaggatgaggatctggagcagcatttcaatttcttaaag
gagcacgttctgcctaagccccgcccctactaccgtgtggaccaatcggcagagcccgag
gtgtggctggatgccatgcaggtctgggaggtgaagtgtgccgacctatcgctgtctccc
gtctacaaagctgccatggggatggtggatccagtgaagggcatttctctgaggttcccc
cgcttccttcggatcagagatgacaaaaagcctgaggacgccacgactggagctcagatt
gctgatttgtacaagaagcagcagcagatccagaaccagggggagaagggcgatctggag
gactactactga

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