Trematomus bernacchii (emerald rockcod): 117500408
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Entry
117500408 CDS
T09643
Name
(RefSeq) retinal-specific phospholipid-transporting ATPase ABCA4-like
KO
K05644
ATP-binding cassette, subfamily A (ABC1), member 4
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
117500408
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tben02000
]
117500408
Transporters [BR:
tben02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
117500408
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
ACT_13
AAA_15
Metallothio_2
AAA_23
Motif
Other DBs
NCBI-GeneID:
117500408
NCBI-ProteinID:
XP_034009225
LinkDB
All DBs
Position
Unknown
AA seq
2325 aa
AA seq
DB search
MKTGSQIRLLLWKNWTLRKRQKGRFIVEICWPVLLFVGLVWLRKANPLYQQHECHFPNKA
MPSAGILPWIQGIFCNVNNPCFRYPTRGESPGVVSNYNNSVLARFYVDAQELLLEEREVQ
GIGRLWHEMSSFSNIMETLRNNPSVVLGRGLKLDDILKDDENFTAFLLENAALSESIVYQ
FVNAEIRLEQFAFGIPDLQLKDIACSQALLDHFIIFPSRMGLHGVRNAMCALSQTRLQRV
EDELYDNLDFFKIFKLMPKIVDRSSEGIDLNNWGRVLKTTSEKMQVLMKRESSQDLLKVV
SALFQAEGSPTFSQMMSSVSQLFCGYPEGGGSKVLSFNWYEDNNYKMFLGVNATKKRNYV
YDDSASPSCNALMETLESNPVTKIVWNSVKPLLMGKILYTPDSPAVHKILKSANTTFEEL
ERLQNMARAWGELGPQLWAFFNNSVQMNMIRDTLGNPTVMNFVDSSLQDTELTTRHILNF
LYNGPEEKREEDMPSFNWSDIFNITDQIIGMFNKYGECIDLDKFVAYTDESQMTHQALYL
LEESKFWAGVVFTDMFPWTNSVPPHVKYKIRMDIDAVERTNKIKDRYWDPGPRADTMEDQ
RYIWGGFAYLQDMIEHGILKLHTGKNWPLGVYVQQMPYPCYVDDLFMITLNRCFPMFMVL
AWIYSVSMTVKSIVLEKELRLKETLKTMGVNNGVIWCTCFIDSFIMMTTSTALLTIIIMG
GKVLNYSNPLLVFFFLLTFTVTTIMQCFLMSVFFNKANLAAACCGIIYFTLYLPHVLCFA
WQNRITKTMKMAASLLSPVAFGFGTEYLSRYEEQGLGLQWDNIMTSPLEKDNYSFLTSIL
MMVFDAVLYGVLAWYLDNVFPGQYGIGRPFYFPFQSSYWRLSATSNTERAYQDAVIMEPD
MVVEQDVESRGSPVTHTCNGSARRKGCKHQSKREQQERKKELLKQHEETQNHVEEGHDSE
GQMFFEADPLGLKRGVQIEDLVMQFSGSSRPAVNHLSINFYEGQITSFLGHNGAGKTTTM
SILTGLFPPTSGTAYVNGSDIRTDMDTIRSSMGMCPQYNILFKYLTVAEHILFYSLLKGR
SQEEAEQEVEEMLLDLGLPHKRDDEAQNLSGGMQRKLSVAMAFTGGSKVVILDEPTSGVD
PYSRRSIWDLLLKYRAGRTVILSTHHMDEADLLSDRIAIISNGQLHCSGSPLFLKNCFGV
GFYLTLVRRMKDLKKRENDCDCASDCSCSCSICTSYKDLSQNHSHHIDRALDGDISSITS
LIHHHVPEAKLIETIGQELTYLLPSKGFKHRAYASLFRELEETLGDMGLSSFGISDTSLE
EIFIKVTADGEAANNGTTPEQWILQRRTNEVGVEGDKEQNGGMHSNGITHGASDSSAGKG
SMQVKGSCLVLKQFHALLVKRFHHAIRSTKDFLAQIVLPASFVLIALISTMVVPPFGEYP
SLTLTPWMYGQQFTFFSNEQPFDPIMKRFTERLLDRPGLGTRCMAGDPLKMPCMNSTSEW
QYPDASPAVSDILKSPEWNQRDPSPSCECSSSKKLTMMPICPPGAGGLPPRQRLEVTGDT
MLDMTDRNISDYLVKTYPTLIRASLKSKYWVNEQRYGGLSVGGQLPILNVNPKDIQHFFH
QLGRMLNITAGHYSRRALREIGPFLHYMESEFNVKVWYNNKGWHAMVAFMNVANNAILRA
FLPPSSRPVEFGITAINHPLNLTKEQLSEVTVLNTSVDAVVAICVIFAMSFIPASFVLYL
IQERVTKAKHLQFVSGVSPVVYWVANFFWDMVNYSLSTALVVGIFLAFDKKCYTSPSNLP
ALITLLLLYGWSVTPLMYPMSYIFDIPSTAYVSLSCINLFIGINSSAITFILELFENNLS
LLMFNEWLKKGLLLFPHFCLGRGLIDMAMNQAVTDVYARFGEEFTQDPFRWDFVGKNIAF
MAVEGFVFFILNLLIQYRFFMDNWFTKCPQTTVRDEDEDVAAERQRVYDGASKTDILQIR
DLSKTYVGSKRAAVDRICVGVPAGECFGLLGVNGAGKTTTFKMLTGDSDVSSGEATVAGY
SILTEILDVHQNMGYCPQFEAIDELLTGREHLYLYARLRGVPESEIPRVAEWGIQKLGLT
EYAGRCAGTYSGGNKRKLSTAIAMIGCPALVLLDEPTTGMDPHSRRFLWNAIMSVIQDGR
AVVLTSHSMEECEALCTRLAIMVNGTFKCLGTIQHLKYKFGDGYVVTMKMKAARAGVSLD
LEPVESFMESSFPGCVQREKHYNTLQYEIASSSLARIFQLVVANKERLSIEDYSVSQTTL
DQVFVNFAKQQTAEDEDATLNKRTAGRRKDVKILPVQRRTRKGPV
NT seq
6978 nt
NT seq
+upstream
nt +downstream
nt
atgaagacaggctctcaaatccgcctgttactgtggaaaaactggaccctccgcaagagg
cagaagggccgcttcatagttgagatctgctggcctgtgttgttatttgttggtctggtg
tggctgaggaaggccaatccactgtaccagcaacatgaatgtcatttcccaaacaaggcc
atgccgtcagcagggattctgccctggatccagggaatcttctgcaacgtcaacaacccc
tgcttcagatatcccaccagaggagagtctccgggcgttgtctccaactacaacaactca
gtattggcacggttctacgttgatgcccaggagctcctgctggaggagagggaggtccag
gggatcggccgtctttggcatgaaatgtcgtccttctcaaacatcatggaaacgttacgc
aacaacccatctgtggtgttaggtcgtgggctgaagcttgatgatattctgaaggatgat
gagaatttcaccgccttcctcttggaaaacgccgccctctcagagtctattgtctaccag
ttcgtcaatgcagaaatacgactggaacagtttgcgtttggtatcccggacctgcagctg
aaagacatcgcctgcagccaggctctgctcgaccacttcatcatcttcccgagtcgcatg
gggctccacggggtccgcaacgccatgtgtgccctcagccagacgaggctgcagagggta
gaagacgaactgtatgacaatctggacttcttcaaaatcttcaaactgatgcctaagatt
gtggacaggagctccgaagggattgacctaaacaactggggtcgggttcttaagacgacc
tcggagaagatgcaagttctgatgaagcgggagagctctcaggatctcctgaaggtggtt
tccgctctgtttcaagccgagggttcccccacattcagccagatgatgtccagtgtgtcg
cagctcttctgtggatacccagagggagggggctctaaggtcctgtccttcaactggtat
gaggacaacaactacaaaatgtttctgggggtcaatgccaccaagaagcgcaactatgtc
tatgacgactctgccagtccctcctgcaacgccctgatggaaaccctggagtccaaccct
gtcacaaaaattgtgtggaattcagtcaagcccctgctgatgggaaagatcctgtacacc
cccgactcccctgccgtccacaagatattaaagagtgctaacactacatttgaggagttg
gagaggttgcagaacatggccagggcctggggggagttgggaccccagctctgggctttc
ttcaacaacagcgtacagatgaacatgatcagggacacgctgggaaacccgacagtgatg
aacttcgtggacagcagtctgcaggacactgaattgaccaccagacacattcttaacttc
ctgtataacggtcctgaggaaaaaagggaggaggacatgcccagctttaactggagtgac
atttttaacatcaccgaccagatcataggcatgttcaacaagtatggagagtgcatcgat
ctggataagtttgttgcttacacggatgagtcccagatgacccatcaggccttgtacctg
ctggaggagagcaagttctgggccggtgtggtcttcactgacatgtttccctggaccaat
agtgtaccgccgcacgtcaaatacaagatccgcatggacattgacgcggtggagcgcacc
aacaagatcaaagacaggtactgggaccccggccccagagcagacaccatggaggaccag
aggtacatctggggaggatttgcttacctgcaggacatgattgaacatggcatcctcaag
cttcacactggcaaaaactggccactcggggtgtatgtccagcagatgccatatccctgc
tatgtagatgacctcttcatgatcacgctgaaccgctgcttccccatgttcatggtgctg
gcctggatctactctgtgtccatgactgtgaagagcatcgtgctggagaaggagctgcgt
ctcaaggagactctcaaaaccatgggggtcaacaacggagtcatttggtgcacgtgtttc
atcgacagcttcatcatgatgactacaagcaccgcgctgctcaccatcattatcatgggt
ggaaaggtgttgaattacagcaacccccttctcgtcttcttcttcctgctgactttcacc
gtcaccaccatcatgcagtgcttcctgatgagtgtgtttttcaacaaggctaacctggca
gcggcctgctgcggcatcatttacttcaccctctatctgcctcatgtcctctgctttgcc
tggcagaaccgcatcaccaagaccatgaaaatggctgctagcttgctgtctccggtggcc
tttggcttcggcacagagtacctgtcgcggtatgaggagcagggtttgggtcttcagtgg
gacaacatcatgaccagtcctttagagaaagacaactactccttcctcacctccatcctc
atgatggtgtttgatgctgtcctttacggcgtcctggcctggtatttggataatgtcttc
ccaggacagtatggcattggtcgacctttctacttcccattccagtcttcatactggcga
ctatctgcaacctcaaacacagaaagggcgtatcaagatgctgtgataatggagccggac
atggtggtggagcaggacgtcgagagcaggggctcaccggtcactcacacctgtaacggc
tcagcgaggagaaaaggctgcaagcaccaaagtaagagggaacagcaggagagaaagaag
gagctgctgaaacaacacgaagaaacccaaaaccacgtggaggagggtcacgactcagaa
ggtcagatgttctttgaggccgatccattgggcctgaagagaggagttcagatcgaggac
ctggtgatgcagttttctggaagttctcgtccagctgtgaaccatctcagcatcaatttc
tacgaaggccagatcacatccttcttggggcacaacggggctgggaaaaccaccacgatg
tccatcctgactggcctgttcccccctacatctggcacagcctacgttaatggaagcgac
atccgcactgacatggacaccatccgctcctccatggggatgtgccctcaatacaacatc
ctcttcaaatatctcacggtggcagagcacatcctgttctactcgctgctgaagggccgc
tcccaggaggaggcggagcaagaggtggaggagatgcttctggacctcgggctgccgcac
aagagagacgacgaggctcagaacctctcaggcggtatgcagaggaaactgtcagtcgcc
atggccttcactggaggatccaaagtggtgatcctggacgaacctacctcgggagtggac
ccctattccaggagatccatttgggacctcctactgaaatatagagctggccggacggtg
atcctgtcgactcatcacatggacgaggccgacctgctgagcgaccgcatcgccatcatc
tccaatggacagctccactgcagcggatcccccctgttcctcaagaactgctttggagtt
ggtttctatttgacacttgtgcgacgcatgaaggatctcaagaagagggagaatgactgt
gactgtgcctcagactgctcctgctcctgctccatctgtaccagctacaaagatctctct
cagaaccattcccatcatatagacagagccctggatggggatatcagcagcatcaccagc
ctcatccaccaccacgtccctgaagccaaactcatcgagacgatcggccaggagctgacc
tacctgctccccagtaaaggcttcaaacaccgagcgtacgccagtctgttcagagagctg
gaggagacgctgggtgacatgggcctcagcagctttggcatctccgacacatctctagag
gagatcttcataaaggtcactgctgatggagaggcagcgaataatggcaccactcctgaa
cagtggatattacagcggagaacaaacgaagttggtgtagagggtgataaagaacaaaat
ggtgggatgcacagtaacggcattacccatggtgcatcagacagcagtgcaggaaagggc
tccatgcaggtgaaagggtcctgtctggtgttgaagcagttccacgcgctgctggtgaag
aggtttcatcacgccatcagaagcactaaagacttcctggcacagatcgtccttcctgcc
agttttgtcctgatcgctctgatctccaccatggtcgtccctccgttcggagagtacccc
agcctgactctgaccccctggatgtacggacagcagttcaccttcttcagtaacgagcag
ccctttgaccccataatgaagcgcttcactgagcgcttactggacagaccgggcctgggg
acacgctgcatggcaggagacccactaaaaatgccctgtatgaacagcacatcagagtgg
cagtatcctgacgcctctcctgcggtcagcgacatcttaaagagtccagagtggaaccag
agagacccgtctccgtcctgcgagtgcagctccagtaagaagctcaccatgatgcccatc
tgccccccaggagccggaggtctgcccccccggcagcgcctcgaggtcacaggggacacc
atgctggacatgacggacaggaacatctctgactacctagtcaaaacctaccccactctc
atcagggccagtttaaagagcaaatactgggtgaatgaacaaaggtatggaggtctgtca
gtcggaggacagcttcccatcctcaacgtcaaccccaaagacatccagcatttcttccat
caactggggcgaatgctcaacatcacagcgggacactattctcgacgtgcactgagggag
attggtcctttcttgcattacatggaaagtgaattcaatgttaaggtttggtataataac
aaaggctggcacgccatggtggccttcatgaacgtggccaataacgccatcctgcgggct
ttcctgcctccatcctccagacctgtggagtttggcatcaccgccatcaaccaccctctg
aacctcaccaaggagcagctgtccgaagtcacagtgttgaacacttcagtagacgctgtg
gttgcgatctgtgttattttcgccatgtccttcatccccgccagcttcgtcctctacctc
atccaggagcgagtgaccaaggccaaacacctgcagtttgtgagcggggtcagccctgtg
gtttactgggtggccaacttcttctgggacatggttaactactccctcagcactgcattg
gtggttggcattttcctggcttttgataaaaagtgttacacatcaccatccaacctgcca
gcactaataactctgcttctgctctatgggtggtcagtgacgcccctgatgtaccccatg
tcctacatattcgacatccccagtactgcatacgtgtctctgtcctgcatcaacctgttc
ataggcatcaacagcagcgccatcaccttcatcctggagctctttgaaaacaatctgtct
ctgctgatgttcaatgagtggctgaagaaaggcctgctgctgttccctcacttctgcctg
gggagagggctgatcgacatggccatgaaccaggctgtgacggatgtttatgccagattt
ggtgaggagttcacacaggacccgttccggtgggactttgtggggaaaaatatagctttc
atggcagtggaaggctttgtcttctttattcttaatcttctgatccagtaccgcttcttc
atggacaattggtttacaaagtgcccgcagactacagtacgagacgaggatgaagacgtg
gcagcagaaaggcagagagtttatgacggagcgagcaagacagacatcctgcagatcaga
gacctctctaagacgtatgtgggcagcaagagggcagctgtggaccggatttgtgtgggt
gtccctgcaggagagtgctttggtcttttgggagttaatggagctggaaagacgacgacc
ttcaaaatgctgactggggacagtgatgtcagctcgggggaggccactgtggctgggtac
agcatcctgacagagattctggacgtgcaccagaacatgggctactgccctcagtttgaa
gccatcgatgagctgctaaccggcagggagcatctgtacctgtacgctcgtctcagaggg
gtgcccgagtccgagatccccagagtggcagagtggggcatccagaagctgggtctgacg
gagtacgcgggccgctgcgccgggacctacagcggaggcaacaagaggaaactctccaca
gcgatcgcgatgatcgggtgcccggcgctggtgctgctggatgagcccacgacagggatg
gacccccactctcgacgcttcctgtggaatgccatcatgagtgtgatccaggacgggcgt
gccgtggtgctaacatcacacagtatggaggagtgcgaggccctctgcactcgactggcc
atcatggtcaatgggactttcaagtgtctgggtaccatccagcatctcaaatacaagttt
ggtgacggctacgtagtgaccatgaagatgaaggcagctcgagcgggcgtgtctctggac
ctggagcccgtggagagcttcatggagagcagcttccccggctgcgtgcagagggagaag
cactacaacacgctgcagtacgagatcgcctcctcctccctggccaggatattccagctg
gtggtggccaataaagaaaggctcagcatcgaagactactccgtttcccagacaacactg
gaccaggtgttcgttaactttgccaagcagcagacagcagaggacgaggacgctacgcta
aacaaacggacagcaggtcgaagaaaagacgtgaagatcttgcccgtgcagaggagaaca
cgtaaaggtcctgtgtaa
DBGET
integrated database retrieval system
