Trueperella bernardiae: QPC17_01910
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Entry
QPC17_01910 CDS
T09150
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tber
Trueperella bernardiae
Pathway
tber03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tber00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QPC17_01910 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tber03021
]
QPC17_01910 (rpoC)
03400 DNA repair and recombination proteins [BR:
tber03400
]
QPC17_01910 (rpoC)
Enzymes [BR:
tber01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QPC17_01910 (rpoC)
Transcription machinery [BR:
tber03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QPC17_01910 (rpoC)
DNA repair and recombination proteins [BR:
tber03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QPC17_01910 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WIM08314
LinkDB
All DBs
Position
413201..417175
Genome browser
AA seq
1324 aa
AA seq
DB search
MLDVNLFDQLSISLATSEDVRKWSHGTVTKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRPRYKGIVCERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTDVDEQRRHDDMPSLTAEYELERENLLKERDAAVEQALKAEEQT
LAEAEAAGEDAASRGKIKRSTQADTRRVRARYEAEIANLEEIWDKFTKLKVGDLEGDEVA
YREMETRWGDYFQASRGAEAIQRRLKSFDLEAEHELLVDQIENGTAQRKTRALKRIKVVN
AFLHSNTPPEAMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLQRMLEL
KAPEIMVNNEKRMLQEAVDALFDNGRRGRPVQGAGNRPLKSISDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPTLKLHQCGLPKTMALELFKPFVQKRLVDLELAKNIKAAKRLIERQR
DEVFDVLEEVIQEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIRLHPLVCSAFNADFDGDQ
MAVHLPLSVEAQAEARVLMLSANNILKPSDGRPVTVPAQDMIIGLYHLTTVRENEVGAGR
YFTSVAEAEMAHDLGELHLNAPVHIRWKADEIIPPRDWAAPEGYEEGDDVILTTTLGTAL
FNDALPTTFPFVNEPVGKKVLGGIVNELAERYPKVDAAASLDALKETGFYWGGRSGVTIA
VSDVIAPANKTKILEEAEERAAKIEQDFQEGNIRDEDRRRDLVALWTEVTDMVADEMRKN
FDDLNNINQMVQSGARGNWMQIRQVAGMRGLVADPKGEIIPRPIKSNYREGLSALEYFTA
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREADCGTSRGLPKPIVALDSDGNELR
LATVDGVPTEVTEKEVSAAEWASAELIRSEDIDTSVYARTLAKDALDADGNVVVAAGTDI
GDVALENLLAAGIKQIHVRSVLTCDSRVGTCTKCYGRSLATGKLVDIGEAVGIVAAQSIG
EPGTQLTMRTFHTGGAASAEDITQGLPRVQELFEARTPKGEAPIAEAAGRLEIEDLERSR
RLIIKRDDGDEDLTYLVAKRAKLLVPEGAHVPVGQQLVEGSVDPKKVLRISGRRVAQLHL
VSEVQNVYRSQGVEIHDKHIEVIVRQMLRRVTVLEAGTTTLLPGELVDVAQFEQANRAAM
AEGGKPASGRPELMGITKASLATDSWLSAASFQETTKVLTEAALNAKSDPLDGLKENVIL
GKLIPAGTGLEQLRHVKVEPTSEARSEYEQLNTFGGLDSFDDIYGYSSLDDYDTSMGYGY
GLNF
NT seq
3975 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtcaatcttttcgatcaactctcgatctcccttgccacgtcggaggatgtg
cgcaagtggtcgcacggcaccgtcactaagccggaaaccattaactaccgtacgctcaag
ccggaaaaggacggtcttttcggcgagcagatcttcggccccacccgcgactgggagtgc
gcgtgcggcaagtacaagcgcccccggtacaaggggatcgtgtgcgagcgctgtggcgtt
gaggtcacgcgttcgaaggtgcgccgtgagcgcatgggccacattgagctggccgcgccg
gtcacccacatttggtacttcaagggcgtgccctcgcgcctgggctacctgctggacatc
gcgccgaaggacctggagaaggtcatctacttcgcggcctacatggtcaccgatgtggac
gagcagcgccgtcacgatgacatgccctcgctcacggccgagtacgagctcgagcgggag
aacctgctcaaggagcgcgacgccgccgtcgagcaggcgctgaaggccgaggagcagacc
ctggccgaggcggaggctgccggtgaggacgccgcgtcgcgcggcaagatcaagcgctcc
acgcaggccgacacgcgccgcgtgcgtgcccgctacgaggccgagatcgccaacctcgag
gaaatttgggacaagttcaccaagctcaaggtgggcgacctggagggcgacgaggtcgcc
taccgcgagatggagacccgctggggcgactacttccaggcttcgcgcggcgcggaggcc
attcagcgtcgcctcaagagcttcgacctggaggccgagcacgagttgctcgtggaccaa
atcgagaacggcaccgcccagcgcaagacccgcgcgctcaagcgcatcaaggtggtcaac
gccttcctgcactcgaacaccccgccggaggcgatggtgctcgacgcgatcccggtgatc
ccgccggatcttcgcccgatggtgcagctcgacggcggccgcttcgccacgtccgacctc
aacgatctctaccgccgcgtcatcaaccgcaacaaccgcctgcagcgcatgctggagctg
aaggcaccggagatcatggtcaacaatgagaagcgcatgcttcaggaggccgtggacgcc
ctgttcgacaacggccgccgtggccgcccggtccagggcgcgggcaaccgtccgctcaag
tcgatctccgacatgctcaagggcaagcagggccgcttccgtcagaacctgctgggtaag
cgcgtggactactcgggccgttcggttatcgtggttggccccaccctcaagcttcaccag
tgtggtctgccgaagaccatggcgctcgagctgttcaagccgttcgtgcagaagcgcctg
gtggacctggagctggccaagaacatcaaggccgccaagcgactcatcgagcgtcagcgt
gacgaggtcttcgacgtgctcgaagaggttatccaggagcacccggtgttgctcaaccgc
gcacctaccctccaccgcctgggtatccaggccttcgagccgcagctgatcgagggtaag
gcgatccgcctgcacccgctcgtgtgttccgccttcaacgcggacttcgacggcgaccag
atggctgttcaccttccgctgtcggtggaggcgcaggccgaggcccgcgtactcatgctg
tcggccaacaatatcctcaagccgtccgacgggcgcccggtcaccgtgccggcgcaggac
atgattatcggcctgtaccacctcaccaccgtgcgtgagaacgaggtgggcgccgggcgc
tacttcacgtctgttgcggaggcggagatggcccacgacctgggcgagctccaccttaac
gccccggttcacatccgctggaaggctgacgagatcatcccgccgcgcgattgggctgcg
cccgaggggtacgaggagggcgacgacgtcatcctcaccaccacgctcggcaccgccctg
ttcaacgacgcccttcccaccacgttcccgttcgtcaacgagcccgtgggcaagaaggtg
ctgggcggcatcgtcaacgagcttgccgagcgttacccgaaggtcgacgcggcggcgtcg
ttggacgcgctgaaggagacgggcttctactggggtggccgctccggcgtgaccatcgcg
gtgtctgacgtgatcgcgcctgcgaacaagacgaagatcctggaggaggccgaggagcgc
gctgcgaagatcgagcaggacttccaggaaggcaacatccgcgacgaggaccgccgccgt
gacctggtggccctgtggactgaggtgaccgacatggttgccgacgagatgcgcaagaac
ttcgacgacctgaacaacatcaaccagatggttcagtccggggcgcgaggcaactggatg
cagattcgtcaggttgccggtatgcgtggcctcgtggccgacccgaagggcgagatcatt
ccgcgtccgatcaagtcgaactaccgcgagggcctgtcggcgctcgagtacttcaccgca
acgcacggtgcgcgtaagggtctggccgataccgctctgcgtacggctgactcgggctac
ctgacccgtcgtctggtggacgtggcgcaggacgtcatcgttcgcgaggccgactgcggc
accagccgcggcctgcccaagccgatcgtggcactcgattccgacggcaacgagctgcgc
ctggccacggtggacggcgttccgaccgaggtcaccgagaaggaggtctcggccgccgag
tgggcatccgccgagctcatccgttccgaagacatcgacacgtcggtctacgcacgcacg
ctcgccaaggatgcgctggacgccgacgggaatgtcgtcgtcgcggccggcaccgacatc
ggcgacgtcgcactcgagaacctgctcgccgcggggatcaagcagatccacgtgcgctcg
gtcctcacctgtgactcgcgcgtgggcacgtgcaccaagtgctacggccgatcgctcgcc
accggcaagctggtggacatcggcgaggccgtgggcatcgtggccgcccagtcgattggc
gagcccggcacccagctgacgatgcgtaccttccacacgggtggtgcggcgtcggccgag
gacatcacccagggtctgccgcgtgtccaggagctcttcgaggcgcgcaccccgaagggt
gaggccccgatcgctgaggccgccggccgccttgagatcgaggaccttgagcgttcccgc
cgcctcatcatcaagcgcgacgacggcgacgaggacctcacctacctggtggccaagcgc
gccaagctcctcgtgcccgagggcgctcacgtgccggtgggccagcagctggttgagggt
tcggttgacccgaagaaggtgctgcgtatctccggccgccgcgtggcccagctccacctc
gtgtccgaggtgcagaacgtgtaccgctcgcagggcgtggagatccacgacaagcacatc
gaggtcatcgtgcgccagatgttgcgccgcgtcaccgttctcgaggccggcaccaccacg
ttgctcccgggtgagctggtggacgtggcccagttcgagcaggccaaccgcgccgcgatg
gcggaaggcgggaagccggcgtcgggccgtccggagctgatgggtatcacgaaggcgtcg
ctggccaccgactcgtggctgtccgcggcgtccttccaggagaccacgaaggtgttgacg
gaggcggcgctcaacgcgaagtccgatccgcttgatggtctgaaggagaacgtcatcctc
ggtaagctcatcccggccggtaccggcctggagcagctgcgccacgtcaaggtggagccg
acgtcggaggctcgttcggagtacgagcagctcaacacgttcggcggcctggattcgttc
gacgacatctacggttacagctcgcttgacgactacgacacgtcgatgggctacggatac
ggtctgaacttctag
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