Trueperella bernardiae: QPC17_03435
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Entry
QPC17_03435 CDS
T09150
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tber
Trueperella bernardiae
Pathway
tber03030
DNA replication
tber03430
Mismatch repair
tber03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tber00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QPC17_03435 (dnaE)
03430 Mismatch repair
QPC17_03435 (dnaE)
03440 Homologous recombination
QPC17_03435 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tber03032
]
QPC17_03435 (dnaE)
03400 DNA repair and recombination proteins [BR:
tber03400
]
QPC17_03435 (dnaE)
Enzymes [BR:
tber01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
QPC17_03435 (dnaE)
DNA replication proteins [BR:
tber03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
QPC17_03435 (dnaE)
DNA repair and recombination proteins [BR:
tber03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
QPC17_03435 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
DUF655
Motif
Other DBs
NCBI-ProteinID:
WIM08609
LinkDB
All DBs
Position
743023..746565
Genome browser
AA seq
1180 aa
AA seq
DB search
MAKNFAHLHVHTDYSLLDGAAKIGRLVKEVAALGQPAVAITDHGNLHGAYELYKAANGAG
IKPIIGLEAYMTPGTSRHDKTRVFWGTEAQRKDDVSARGSYTHMTLLAETTEGMHNLFRM
QSLASIEGTLGKAARIDRELLEKYHHGLIGTAGCPSGEIQTRLRLGQFDEALKAAGEFQD
IFGKENFYFELMDHGLDIERRVKDDLLAIARQIGAPLLATNDSHYVTQDQSTVQDAMLAL
NSGSTLMDPDRFRFEGTGYYIRSSEDMWNSFGHLEGACENTLEIVERCNVHFDTTADGVN
YMPKFPVPSGEDEKSWFVREVNDGLHRRYGDVIPDDVRKRADYEMDVILQMDFPGYFLVV
SDYIRWARRHGIRVGPGRGSGAGSMVAYALEITQLDPIKHDLLFERFLNPERISMPDLDI
DFDDSRRDEVIEYVEDKYGKDKVSQVVTFGTIKAKQSLKDASRVLGYPFEMGDRLTKAMP
PSVMGKDIPVNDLFNKDHPRYAEAGEIRELIDNDPDCKKVYDLACGLEGMTRQTGMHACA
VIMSSKPLTDVIPVMMRQQDGAILTQFEYPECEELGLIKMDFLGLSNLTVIEAALANIRV
NGKDAPDIDAIPLDDPKTYELLARGDTLGIFQLDGAGMRTLLRQMKMDSFADISAVSALY
RPGPMGANSHTNYALRKNGLQEKTPIHPELEEALEDILGVTHGLIVFQEQVMRIAQKLAG
FTLGQADILRKAMGKKKAEVLQQQFASFSQGMRDNGFSQESIDTLWDILLPFSSYAFNKS
HSEAYALVSYQTAYLKSHFPAEFMAALLTSKMSDKTKVATYLAECRRMGIKVQVPDVNSS
LADYTAVGDEIRVGLRAVRNVGANVVDGIIKAREEKGPFTSFQDFLDKIPLSACNKRSIE
CLIKAGGFDSLGECRRALVAIVEEAIDAVIPVKRNEAAGQFDLFGDLGVGGSDGFDVAIP
DIPEWDKREKLNFEREMLGLYVSDHPLSGMENFLNRAADTTVVDLLESDNVRDGQMVTIA
GLISAVQTKITKKSGKAWAIATIEDRTGPIDVNFFPATYQQVSSILIPDAVVIVEARAQI
EDEGPVKLSARTMTLPPAGEIELDHPIDIKIDERACSAVKMDQLAEILARYPGQSPVRLH
VWCAAPNKTVVAEVASNFWVSPEPSLYTELKVLLGRDCVV
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atggctaagaacttcgcgcaccttcacgtccacaccgattactcgctgctcgatggagcg
gcgaagatcgggcgcctagtcaaggaagtggcggcgcttggccagcctgccgtggcgatt
accgaccacgggaatctgcacggcgcctacgaactgtacaaggcggcaaacggcgcgggg
atcaagccaatcatcgggctggaggcttacatgacgccgggcacctcccgccacgataag
acacgcgtattttggggcacggaagcccagcggaaggacgacgtgtcggcgcgtggctcc
tacacgcacatgacgctgctggcggagaccacggagggcatgcacaacctgttccgcatg
cagtccctcgcctcgatcgagggcacgctcggcaaggctgcgcgcatcgatagggagctg
ctggagaaataccatcacgggctcatcggcacggcgggatgcccgtcgggggagatccag
accaggctgaggctgggccagtttgacgaggcgctgaaggctgcgggcgagttccaggac
atcttcggcaaggagaacttctacttcgagctcatggaccacggcctggatatcgaacgc
cgggttaaggacgatctgctggcgatcgcgcgccagatcggggcgcccctactggccacg
aacgattcgcactacgtcacccaggatcagtccacggtgcaggacgcgatgctcgccctg
aactcgggctccacgctcatggatccggaccgcttccgcttcgagggtacgggctactac
atccgtagctcggaggacatgtggaattctttcggccacctcgagggcgcgtgcgagaac
acgctggagatcgtggagcgctgcaacgtccacttcgacaccacggccgacggcgtgaac
tacatgcccaagttcccggtgccgagcggggaagatgagaagtcgtggttcgtgcgggag
gtcaatgacgggctgcaccgccgctacggggatgtcatcccggatgacgtgcgcaagcgc
gcggactacgaaatggacgtcatcttgcagatggacttccccggctacttcctggtggtc
tcggattacatccgctgggcgcggcggcacgggatccgcgtgggcccggggcgcggatcg
ggtgcgggatcgatggtggcctacgcactcgaaatcacccagctcgatccgatcaagcac
gatctgctctttgagaggttcttgaacccggagcgcatctccatgcccgatctcgatatc
gacttcgacgatagccggcgggacgaggtgatcgagtacgtggaggacaagtacggcaag
gacaaggtctcccaggtggtcacgttcggcacgatcaaggccaagcagtcgctcaaggat
gcctctcgcgtgctcggctacccgttcgagatgggcgatcggctcaccaaggcgatgccg
ccgtcggtgatgggcaaggacatcccggtcaatgacttgttcaacaaggatcacccgcgg
tatgcggaggcgggggagatccgcgaactgattgacaacgatccggactgcaagaaggtc
tatgacctggcctgtggcctggagggaatgactaggcagacgggcatgcacgcctgcgcc
gtcatcatgtcctccaagcccctgaccgatgtcattccggtcatgatgcgccagcaggac
ggcgcgatcctcacccagttcgaataccctgagtgcgaggaactgggcctgatcaagatg
gacttcctcggcctgtcgaacctcacggtgatcgaggcggccctggcaaacatccgggtc
aacggaaaggatgccccggatattgacgcgatcccgctggatgatccgaagacgtacgag
ctgctggctcgcggcgacacgctcggcattttccagctcgatggcgccggcatgcgcacg
ctgcttcgccagatgaagatggacagcttcgccgacatctcggccgtctccgccctctac
cgcccgggcccgatgggcgcgaactcgcacacgaactacgccctgcgcaagaacgggctg
caggaaaagacgccgatccacccggagctggaggaggccctcgaagacatcctgggcgtt
acccacggcctcatcgtgttccaggagcaggtgatgcgtatcgcccagaagctggcgggc
ttcacgctgggccaggcagatattttgcgtaaggcgatgggcaagaagaaggccgaggtg
ctccagcagcagttcgccagcttctcccaaggtatgcgggacaacgggttctctcaggag
tcgatcgacaccctgtgggacatcctgctgcccttctcctcctacgccttcaacaagtcg
cattcggaggcctatgcgctggtgtcctaccagacggcctacctcaagtcccatttcccg
gccgaattcatggcggccctgctcacctcgaagatgtcggataagacgaaggtggccacc
tatctcgctgaatgccggcgcatgggcatcaaggtgcaggtgccggacgtcaacagttcg
ctggccgactacacggcggtcggcgatgagatccgcgtgggcctgcgggccgtacgcaac
gtgggcgcgaacgtagtggacggcatcatcaaggcgcgcgaggagaaggggcccttcacc
tcgttccaggacttcctggacaagatcccgctgtcggcctgcaacaagcgctcgatcgag
tgcctgatcaaggcgggtggctttgactcgctgggggagtgccgccgcgcgctcgtggcg
atcgtggaggaggcgatcgatgcggtcatcccggtcaagcgcaacgaggcggccggccag
ttcgatctcttcggagacctgggggttggcggtagcgacgggttcgacgtggcgatccct
gacatccccgaatgggacaagcgcgaaaagctcaacttcgagcgggagatgctcggcctg
tatgtctcggaccacccgctatcgggcatggagaacttcctcaaccgcgccgcggacacc
acggtggttgacctgctcgaatcagacaacgtgcgtgacgggcagatggtgacgatcgcg
ggcctcatatccgccgttcaaacgaagatcacgaagaagtcgggcaaggcgtgggcgatc
gccacgatcgaggaccgcaccggcccgatcgacgtcaacttcttcccggccacctatcag
caggtgtcttcgatcctgatcccggacgcggtagtcatcgtagaggcccgggcccagatc
gaagatgaggggccggtcaagctgtctgccaggacgatgaccttgccgccggcgggcgaa
atcgagctggaccacccgatcgacatcaagatcgacgagcgggcgtgtagcgcggtgaaa
atggatcagctggcggagatccttgcccgctatccgggccagtcgccggtgcgtctacac
gtgtggtgtgccgcgccgaacaagaccgtggtggccgaggttgcgagcaacttctgggtc
tccccggagccgtcgctctacacggagctcaaggtgctactcgggcgggactgcgtggtg
tag
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