Trueperella bernardiae: QPC17_04130
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Entry
QPC17_04130 CDS
T09150
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tber
Trueperella bernardiae
Pathway
tber03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tber00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QPC17_04130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tber03019
]
QPC17_04130
03009 Ribosome biogenesis [BR:
tber03009
]
QPC17_04130
Enzymes [BR:
tber01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QPC17_04130
Messenger RNA biogenesis [BR:
tber03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QPC17_04130
Ribosome biogenesis [BR:
tber03009
]
Prokaryotic type
rRNA helicases
QPC17_04130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WIM08734
LinkDB
All DBs
Position
complement(889221..890951)
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AA seq
576 aa
AA seq
DB search
MTSFSGLNLPAHILSAISDMGYVQPTPIQAEAIPPLLKGRDVVGVAQTGTGKTAAFALPM
LTHVDPDLPKVQALVLAPTRELAMQGADAIDKFASTTTGLDVVAVYGGSSYVPQIGALKD
GAQVVVGTPGRVMDLIDKGALKLDSVRYFVLDEADEMLRMGFAEDVEKIASGLPEERITA
LFSATMPTPIRRVAETHMTDPVEVTVAPPASTIETIHQTYAVVPSRHKIGALARVLATTP
ADAALVFVRTRATAEELAIELSTRGVQAATLSGDVQQRDREKLVDRLRTGTLDVLVATDV
AARGLDVERIGLVVNFDVPREVDTYVHRIGRTGRAGREGTSLTFVTPKERSRLRRIEHIT
GAHMEQVELPTPAEVSGLRARRLMAEAKDRYEVGRLSVYRDVIAEFRAEQVDAEHPLSPE
DLIAALLAIGVRDPGPQSDDEPERLTARFEGEDRKGRKDRKERPARQGREGRKNKPKTFE
GEGTMYRVEVGRRDGVSPGAIVGALTNEGGLNGSQLGRIDIYPTFSLVQIDREIDRDTQR
RIAKARVSGRDLNISKDSGPGMRGRDRAQRRPRHFR
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcattttctgggctcaacctgcccgcacacatcctgtccgccatctccgacatg
ggctacgtccagcccaccccgatccaggccgaggccattccacccctcctcaaggggcgc
gacgtcgtcggcgtggcccagacgggcaccggcaagacggcggccttcgccctgccgatg
ctcacccatgtcgatcctgacctacccaaggtccaggccctcgtgctcgcccccacgcgc
gagctcgccatgcaaggcgccgacgcgatagacaagtttgcctccactaccacgggcctg
gacgtcgtggccgtctatggcggctcgtcctacgtgccacagatcggcgcgctgaaggac
ggagcgcaggtggtggtcggcacgccggggcgcgttatggacctcattgacaagggcgcg
ctcaagctcgattccgttcgctacttcgttctcgacgaggccgatgagatgctgcgcatg
ggctttgccgaggacgtggagaagatcgcctccgggctgcccgaggagcgcatcacggcg
ctgttctcggccacgatgcccacgccgatccgccgcgtggccgagacacacatgactgac
ccagtggaggtcacggtggctcccccggcatccacgatcgagacgatccaccagacctat
gcggtggtgccctcgcgccacaagatcggcgctcttgcccgcgtgcttgccacgacgccg
gccgacgccgccctcgtcttcgtccgcacccgcgccactgccgaggaactcgccatcgag
ctatccacccgcggcgtgcaagccgcaaccctctccggtgacgtgcagcagcgcgaccgg
gagaagcttgtcgatcgcctgcgcaccggcacgctcgacgtgctggtagccaccgacgtc
gccgcccgcgggctcgacgtggagcgcatcgggttggtggtcaacttcgacgtgccgcgc
gaggtcgacacctacgtccaccgcatcggccgcactgggcgcgccgggcgcgagggcacg
tcgctgaccttcgtcacgcccaaggagcgtagccgcctgcgtcgcatcgagcacatcacc
ggcgctcacatggagcaggtagagctgcccaccccggccgaggtgtccggtctgcgcgcc
cgccggctcatggccgaggccaaggatcgctacgaagtgggccgcctgtcggtctaccgc
gacgtcattgccgagttccgtgccgagcaggtagacgccgagcacccgctttctccggag
gacctcatcgccgcgctgctggcaatcggagtgcgcgacccgggcccgcagtccgacgac
gagcccgagcgcctcaccgcccgcttcgaaggcgaggaccggaaggggcgcaaggatcgc
aaagagcgcccggcacgccagggtcgcgagggccggaagaacaagccgaagaccttcgag
ggcgaaggcacgatgtaccgcgtggaggttgggcgccgcgacggcgtctcccccggcgcg
atcgtgggtgcgctcacgaacgagggcggcctcaacggatcccagctgggccgaatcgac
atctaccccacgttctcgctcgtccagatcgaccgcgagatcgaccgcgacacccagcgc
cgtatcgccaaggcgcgcgtgtccgggcgtgacctcaacatctccaaggactccggcccg
ggtatgcgcggccgggaccgcgctcagcgccggccgcgccacttccgctag
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