Trueperella bernardiae: QPC17_05515
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Entry
QPC17_05515 CDS
T09150
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tber
Trueperella bernardiae
Pathway
tber03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tber00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QPC17_05515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tber03019
]
QPC17_05515
03009 Ribosome biogenesis [BR:
tber03009
]
QPC17_05515
Enzymes [BR:
tber01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QPC17_05515
Messenger RNA biogenesis [BR:
tber03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QPC17_05515
Ribosome biogenesis [BR:
tber03009
]
Prokaryotic type
rRNA processing factors
QPC17_05515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
Imm51
Motif
Other DBs
NCBI-ProteinID:
WIM07221
LinkDB
All DBs
Position
complement(1184165..1186564)
Genome browser
AA seq
799 aa
AA seq
DB search
MADDANERANVAPMTTLLFQEPDMTRAVRSRRRRDDDAEAPAAHSGAEANSDSSEESTKS
RSRRGRRGGRKSADEAQAGNESAEKSAEKSQETGEEAPPKRSRRQKSDGNAKANQRSAKD
KDKDEAEQPKEAAAESDAEDAEEESESSTTVRRRRRRRSTEEADDGVTAPKGSTRLEAKK
RRRKEGRRAGRRRTSISESEYLARREAVDRTMLVREQDGLNQIAVLEDGVLVEHYVARHT
QTSMVGNVYLGRVQNVLPSMEAAFVDIGKGRNAVLYAGEVNWDAVGMNGKPRKIEDALKS
GDTVLVQVTKDPIGHKGARLTGQITLAGRHLVLVPDGSMTGISRKLPEKERTRLKDILKR
VVPAEHGVIVRTAAEGATEEQIQSDVDRLVKAWADIQAKSKSTKNAPSMLKSEPELAVRV
VRDIFNEDFKELKVSGDEAWQTIHDYVAELSPELVDRLEHWTSEKDIFAASRVDEQLSKA
FDRKVFLPSGGSLIIERTEAMTVIDVNTGKFTGAGGSLEETVTRNNLEAAEEIVRQLRLR
DIGGIIVIDFIDMVLEENRDLVLRRLVECLGRDRTRHQVAEVTSLGLVQMTRKRVGQGLV
EAFSTTCECCDGRGYITHEHPVERGETEAQNPRTNPRRQQQPAAPVAAEEDPKHDEVRAA
LANIAAAASSKHESEEAPAEQAGESEDKSKSSRRSSGRRRSGGSRGKTVEKTAGEVAAAE
KSGGEKAEAAAEKPAAKAARPARKAPAKTETKADAPAETGAEAEPKRQRRRRVSSSGTIT
PGSNTAAIMTFPAKGEAEK
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgatgccaacgaacgcgcaaacgttgcgcccatgaccaccctccttttccag
gagcccgacatgacccgggccgtccgttctcgccgccgccgcgacgacgacgccgaagca
ccggccgcgcattcgggcgcggaggcgaactcggacagctcagaggagtccacgaagagc
cgcagccggcgtggccgccgcggcgggcgcaagtcggcggacgaggcgcaggctggcaac
gagtcggctgagaagtcggccgagaagtcgcaggagacgggcgaggaggcgccgccgaag
cgctcgcgccgccagaagtccgacggcaacgccaaggccaaccagcgaagcgccaaggat
aaggacaaggacgaggccgagcagcccaaggaggccgccgccgaatctgacgctgaggat
gccgaggaggagtcggagtcgtcgacaaccgtgcgccggcgccgtcgtcggcgcagcacc
gaggaggccgacgacggggtgaccgccccgaagggttccacccgcctggaggcgaagaag
cgccgccggaaggaggggcgccgggcagggcgtcgtcggacgtcgatctcggagtcggag
tacctggcgcgccgcgaggcggtagaccggacgatgctcgtgcgcgagcaggacggcctc
aaccagatcgcggtgctggaggacggggtgctggtcgagcactacgtggcacgccacacg
cagacctcgatggtcggcaacgtctaccttggccgcgtgcagaacgtactgccctcgatg
gaggccgcgttcgttgacatcggcaagggccgcaacgccgtgctttatgcgggcgaggtc
aactgggacgccgtgggtatgaacggcaagccgcgcaagatcgaggacgcgcttaagagc
ggcgacacggtgctcgtgcaggtcacgaaggacccgatcggccacaagggcgcgcgcctg
accggccagatcacgctggccggacgccacctcgtgctcgtgccggacgggtcgatgacc
ggcatctcacgcaagctgccggagaaggagcgcacgcgcctgaaggacatcctcaagcgc
gtggtgcccgccgagcacggcgtcatcgtccgcacggccgccgagggcgctaccgaggag
cagatccagagcgacgtcgaccggctggtcaaggcctgggcggacattcaggccaagtcc
aagtccacgaagaacgccccctccatgctcaagagcgagccggagctggccgtgcgcgtg
gtgcgtgacatctttaatgaggacttcaaggagctcaaggtttcgggtgatgaggcgtgg
cagacgatccacgattacgtggccgagctgtcgccggagctggtggaccgcctcgagcac
tggacgagtgagaaggacatttttgcagcctcccgcgtggacgagcagctgtccaaggca
ttcgaccgcaaggttttcctgccgtcgggcgggtctctcatcattgagcgtacggaggcc
atgacggtgatcgacgtcaacaccggaaagttcaccggcgcgggcggctcgctcgaagag
acagtgacgcgcaacaacctcgaggccgcggaggagatcgtgcgccagctgcgcctgcgt
gacatcggcggcatcatcgtcatcgacttcatcgacatggtcctcgaagagaatcgcgac
ctggtgctacgccgcctggtggagtgcctggggcgcgaccgcacccgccaccaggtggcc
gaggtgacctcgctcgggctcgtgcagatgacccgcaagcgcgtgggtcagggcctcgtg
gaggccttttccaccacgtgcgagtgctgcgacgggcgcgggtacatcacccatgagcac
cccgtcgagcgcggcgagaccgaggctcagaacccccggacgaacccgcgccgccagcag
cagccggccgcgccggttgccgcggaggaagacccgaagcacgacgaggtccgcgcggca
cttgccaacatcgcggccgctgcgtcgtccaagcacgagtcggaggaggccccagccgaa
caggcgggggagtctgaggacaagtcgaagagctcgcgtcgcagctccggccgacgccgg
tcgggcggctcgcgtgggaagacggttgagaagacggccggcgaagtggcggcggccgag
aagtcgggcggcgagaaggcggaggcagcggctgagaagcccgcggccaaggctgcgcgg
cccgcgcggaaggcgcccgcaaagactgagaccaaggctgatgcgccggcagaaaccgga
gccgaggccgagccgaagaggcagaggcgccgcagggtgtcgtcgtcgggaacgatcacg
ccgggctcgaacacggcggcgatcatgacgttccccgccaagggcgaggcggagaagtag
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