Trypanosoma brucei gambiense: TbgDal_III1840
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Entry
TbgDal_III1840 CDS
T06526
Name
(RefSeq) hypothetical protein, conserved
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
tbg
Trypanosoma brucei gambiense
Pathway
tbg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TbgDal_III1840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbg03019
]
TbgDal_III1840
Messenger RNA biogenesis [BR:
tbg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
TbgDal_III1840
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
TbgDal_III1840
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
ATG17_like
Motif
Other DBs
NCBI-GeneID:
23858956
NCBI-ProteinID:
XP_011772138
UniProt:
C9ZK81
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Position
3:complement(423828..425642)
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AA seq
604 aa
AA seq
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MTNNKKSQQEIERLLRRTQEEINSYDSVYTKFNNSTSPQREKLEAELRREARKLQRSYDL
IKAACPPSDSKDSKGSVEPWMQKLHERIETFKMCEQAMKTKGSGKDGLGTGALSEAQQEG
VKDVEAWLKNTTDSLRKQVQLSESDAERSGRGNHGRNKNSVSATTSTRTQKLKFHVARLE
LLLKGIANGDVNPESVYGIKERVEAIKRGDTNGSDDDDNNEDEDLYAQFGFDEQLVSERR
RGGSTVGEDEDAASPNSRNPNNKLSPVRMGGTKSNTPSSSAKMSGPTSSDARKGPGSATA
NRMDGAKRLGSGSPSPHKGNTSITSTVGGRDGLHDNWDENADFPEDDMDKMNDDTFGDDA
MAMVGTGSLADMARATSTGSRLGDWEKGRPASLVSPPSTTSKKSNLEQPAAAAPSQASGT
ASMSPSSANTAATGETRQLSAAPASHVSPAPASTAHDDFLDRNTMLQLIDMSLANLPHTQ
DVDRQRPFEPSNPTVHVPFFPQQVLPALASPEIYRTFELETLFFIFYYHQNTYQQYCAAG
QIKERSFRYHTQLNTWFKRNGPPKESLEGSERGSFQFFNFEEGWNLEEKEDFVFDYKYLE
NELR
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgacaaataataaaaagagtcaacaggagatcgagcggcttcttcgccgtacccaggag
gaaattaacagctacgatagtgtttacacgaagttcaacaacagtacgtcaccccagagg
gagaaactagaggccgaactgagaagggaggctaggaagcttcaacgcagctatgactta
ataaaggccgcttgcccaccttcggactccaaggactcgaaagggagcgttgagccgtgg
atgcaaaaacttcacgagaggatcgaaacgtttaagatgtgtgagcaggcgatgaaaacg
aagggatctgggaaagatgggttaggcactggtgccttgagcgaggcgcagcaggaggga
gtaaaggatgtggaggcatggctcaagaacacaacagatagtttgcggaagcaagtgcag
ctctccgagtcggatgcggaacgcagtgggcgtggaaaccacggacgtaataagaattct
gtgtctgcaaccacttcgacccgtacgcaaaaacttaaatttcacgtagcacgccttgag
ttgctcctcaaaggtatcgcaaacggtgatgtaaaccccgaaagtgtttacggaatcaaa
gagcgtgtagaggcaatcaaacgtggtgataccaacggcagcgacgatgatgacaacaat
gaagatgaagacctgtacgcccaatttggtttcgacgagcagttagtttcagagaggcga
cggggtggtagcacggttggggaggatgaggatgcggcttctcctaattcccgcaaccca
aataacaaactgagtccggtgagaatgggagggacaaaatccaatacaccttcttccagt
gcgaagatgagcggtcccacttcctctgatgccaggaaaggccccggttccgcaacggca
aacagaatggatggggcgaagcggttgggttccggaagcccgagcccacacaagggaaac
acctcaataacatcgacggtaggtggcagggacgggttgcacgacaactgggacgaaaac
gcagattttccggaagacgacatggacaaaatgaacgacgacaccttcggcgacgatgcg
atggccatggttgggaccggttctttagcagatatggcgagggcaacgagcaccggttca
cggctgggtgattgggagaagggccgacctgcaagtctcgtgtcgccaccttccactaca
agtaagaagtcaaaccttgagcaaccggcggcagcggctccatctcaggcatccgggacg
gcttccatgtctcccagcagtgccaacaccgccgctactggagaaacgaggcaactcagc
gctgcacccgcttcccatgtttcccccgcaccggcttccacagcacacgatgattttttg
gacaggaacaccatgctgcagcttattgacatgtccttagcaaacttgccacatacgcag
gacgttgaccggcaacgtccatttgagccctcgaatccaacagtgcacgttcctttcttt
ccacagcaggttctcccagcgttagcttctccggagatttaccggacatttgagcttgag
acccttttctttatcttttactatcaccagaacacgtatcagcagtattgtgccgcggga
caaattaaggagcgttccttccgttaccacactcaactcaacacttggtttaagcgaaat
ggtcccccaaaagaatctctggaggggagcgagcgcgggtcgtttcagttcttcaacttt
gaggaaggttggaatttggaagagaaagaagacttcgtttttgattacaaatacctcgag
aatgagctgcgttga
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