Trypanosoma brucei gambiense: TbgDal_IV1170
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Entry
TbgDal_IV1170 CDS
T06526
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit, putative
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
tbg
Trypanosoma brucei gambiense
Pathway
tbg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tbg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TbgDal_IV1170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tbg03021
]
TbgDal_IV1170
03019 Messenger RNA biogenesis [BR:
tbg03019
]
TbgDal_IV1170
Transcription machinery [BR:
tbg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
TbgDal_IV1170
Messenger RNA biogenesis [BR:
tbg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
TbgDal_IV1170
U7-dependent histone pre-mRNA processing factors
TbgDal_IV1170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-Casp
Lactamase_B
Lactamase_B_6
Anti-Pycsar_Apyc1
RMMBL
Lactamase_B_2
CPSF73-100_C
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
23859520
NCBI-ProteinID:
XP_011772702
UniProt:
C9ZLY7
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All DBs
Position
4:complement(<268977..>271289)
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AA seq
770 aa
AA seq
DB search
MFSHAAYSAPGVHVLDSSSPRHLAAGPQPAAAPPSTDEVEILPIGSGGEVGRSCVVVRYK
GRSVMLDCGNHPAKSGLDSLPFFDSIRCDEIDLVLITHFHLDHCGALPYFCEQTSFRGRI
FMTSATKAFYKMVMNDFLRIGASAEDIVNNEWLQSTIEKIETVEYHEEVTVNGIHFQPFN
AGHVLGAALFMVDIAGMKLLYTGDFSRVPDRHLLGAEVPPYSPDILIAESTNGIRELESR
EERESLFTTWVHDVVKGGGRCLVPVFALGRAQELLLILEEYWEAHKELQHIPIYYASSLA
QRCMKLYQTFVSAMNDRVKKQHENHRNPFVFKYIQSLLDTRSFEDTGPCVVLASPGMLQS
GISLELFERWCGDKRNGIIVAGYCVDGTIAKDILSKPREITKPDGKVLPLRMRTIQSVSF
SAHSDGRQTRDFIQALPKTKHVILVHGNVGAMGQLKNKLQQDFADRGVQVYATKNQEAIR
IPFSVQRTAKVLGTLARNPPRDGEFISGVLLMSGHHTYSVVHPTDIPHFTDLDVAQIQQA
IVLPLPRYKSPHEVLEMLKRYFAQSQMFSDVTPHEQQKQEGGDTANAIGGGQEQECAGNA
TQITVSKDVWVDVQQSTRSQTTVTVNWTSSHHNDLLADVTCIALIKLMQQEHAASSADAL
PVDVCGNDRLFRLKCFHHMMSQFYPSVVTNLGTGVCTVELEDGQHATITGCIEIDLQGNT
KSSYSSTEVERLKTVLKRVYLTLFPIPVDQGWCDCGMIHGAEPAPIDEGT
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgttttcacacgcggcgtacagcgcacccggcgtacatgtgcttgacagctcctcccca
cgccatcttgcagcgggacctcaaccggccgccgcgccgccatccacagacgaggtggag
attctaccgatcggcagcggcggggaagtcggccgttcgtgtgtggttgtccgctacaag
ggccgctccgttatgctggactgcgggaaccacccggcgaagagcggattagattctctt
ccattttttgacagcatccgctgtgacgaaattgaccttgtgctcatcactcactttcac
ctcgatcactgtggagcactgccgtacttttgcgagcagacttccttcagggggcgcatc
ttcatgacgagcgcaacaaaagctttctataaaatggtgatgaacgatttcctgcgcatt
ggtgcaagtgccgaggacattgtgaacaacgagtggctccaaagtaccattgaaaagatt
gaaacagtggaataccacgaagaggtgacagtgaacggtattcatttccagcctttcaat
gccggtcacgttcttggggctgcacttttcatggttgatattgcggggatgaaactatta
tatacaggtgacttctcacgtgttcccgaccgtcaccttctgggagctgaagttccaccg
tactcgcccgatattctcattgcagagagtacaaatggtatacgcgaactggagtcacgt
gaagagcgggaatccctgtttacgacgtgggtgcacgatgtcgtgaaggggggtggacga
tgtttggtaccagtatttgctctgggccgcgcgcaagaacttcttctcatacttgaagaa
tattgggaagcacacaaggagttgcaacacatacccatctactacgcatcttcgctagcc
cagcgatgcatgaagctgtaccagacatttgtcagtgctatgaatgaccgagtgaagaag
caacacgaaaatcaccgaaaccctttcgtgtttaagtatattcagtcacttctcgacact
cgctccttcgaagacaccgggccatgcgttgtgttggcttctcctggtatgctacagtcg
ggtatatcacttgaactgtttgaaaggtggtgcggtgacaaacggaatggcattattgtt
gctggctattgcgttgacgggaccatcgccaaggacattctctcaaaaccaagggaaatc
accaagccagacggaaaggtcctgcctctccgtatgagaacaattcaatccgtctccttc
tccgctcactccgatggcagacagacacgcgacttcatccaagctctacccaagacaaaa
catgtcattcttgtacatggcaacgttggggcaatggggcaactgaaaaacaaactccaa
caagactttgccgaccgcggggtgcaggtatacgccaccaaaaaccaagaagccattcgt
ataccctttagtgtgcaacgaacagccaaggtattaggtacgttggcccgtaacccacct
cgcgatggcgaattcattagcggggtgttactaatgtccggacatcacacatatagcgta
gtgcatccaaccgatattccgcacttcacggatctggacgtggcgcaaatccaacaggcc
atagttctgccgcttccaaggtacaagtctccgcacgaagtgctcgaaatgctgaagcgg
tacttcgcgcagagtcaaatgttcagtgacgtaaccccgcatgaacagcagaagcaggaa
ggaggggatacagccaacgccataggaggtggtcaggagcaggagtgtgcgggaaatgca
acgcagattacggtttccaaagacgtttgggttgatgttcagcagagcacgagatctcag
acgacagtcacggtgaattggacctcgagccatcacaacgacctccttgcggatgtcact
tgcattgctctcattaagctcatgcaacaggaacatgcagcaagcagcgcagatgcgctt
ccggtggacgtttgtggaaatgatcgtctttttcgactaaaatgctttcaccacatgatg
tcacagttctacccatctgttgtcacaaaccttggcaccggggtgtgcaccgtggagtta
gaggatggacaacacgccaccattacgggctgtattgaaattgacctgcagggaaacaca
aagtcaagttactcatccaccgaagtggagcggttgaagaccgtcctgaagcgagtatac
ctgactctcttccccattcctgttgaccagggctggtgtgactgtggtatgattcacggt
gctgaaccggctcccattgacgagggcacatag
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