KEGG   Trypanosoma brucei gambiense: TbgDal_IV190
Entry
TbgDal_IV190      CDS       T06526                                 
Name
(RefSeq) coatomer alpha subunit, putative
  KO
K05236  coatomer subunit alpha
Organism
tbg  Trypanosoma brucei gambiense
Brite
KEGG Orthology (KO) [BR:tbg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:tbg04131]
    TbgDal_IV190
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tbg04147]
    TbgDal_IV190
Membrane trafficking [BR:tbg04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    TbgDal_IV190
Exosome [BR:tbg04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   TbgDal_IV190
  Exosomal proteins of bladder cancer cells
   TbgDal_IV190
SSDB
Motif
Pfam: COPI_C Beta-prop_WDR5 B-prop_COPA_B_2nd Beta-prop_WDR3_1st WD40 Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz WDR55 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd EIF3I WD40_Gbeta Beta-prop_TEP1_C Beta-prop_EML TPR_COPA_B Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR41 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_IFT140_1st Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_Nup120_160 Beta-prop_RIG_2nd Beta-prop_Aladin WDR90_beta-prop_4th
Other DBs
NCBI-GeneID: 23859600
NCBI-ProteinID: XP_011772604
UniProt: C9ZLN9
LinkDB
Position
4:complement(52327..55905)
AA seq 1192 aa
MLTRFDVRSSRVKGISFHKTRPWVLCGLHNGTVQIWDYRVNTSVDKYDEHSGAVRGVDFH
DTQPLFVSGGDDYLVKVWNYKARRSLFTLKGHMDYVRSTFFHHEQPWIVSSSDDFTVRIW
NWQNRSSLACLPGHTHYVMCARFHPRDDIVVSASLDRTIRVWDISSLRVRKQQPGIAQDL
LGTSDVGLKYSLEGHDKGVNWVCFHPTQPLIASASDDRTVRVWRIGSTTCTEEVQLRGHT
NNVSCVVYTKDYLVSNGEDRTIRVWDVKTRCSVMLFRRESDRYWMLAALLEKNLLAAGHD
SGVHVFKLFRERPASTMNGNVLHYVHGNVLHSYNMESKTESKFSLSRNLHPPLTLSCNPV
DNMAVVFYDKDGGCASTLTIPKPGCTVDADVKKRLGILAALFYAPNKCAFLDKNKNIILC
NAHGDGEKVIKHEKNLKALFPGPAGYILRQTEEGMELFHVAQQSVAAEVPITETKYVVWD
KDFTKVAFLGITTVHVMTRRLRSITFFSEPSIRIKSAAFDEQRNILYYTTSDHLKYCNLR
NGECGIIQCLPSPIYLVRASGDTVWALSRNGKVVVMELNNPELNFKLKLQQQAYRDVIKI
IRQKQLRGQALVGYLHKHGHDEVALYLVSDPLTRFNLAVECGAMDVAKTAALELNQPALW
RRLAEAATSYGDIHLALLAHTKTGNFHGASFLSLITGNMSALDHMVNTVRDENFGLHYGM
YLDDAHQRIKTLTNTGQLPLAYVAAKSAGLDELAASLLEKMDPDVAERMRQTEVKVRLEA
PTVTPVTDNWPMLQVEESVFSRFLREPNLLSGAGVGIEEEEYAEAGAGWDDVDGLPNSDD
GSGGLDGVEGSEAAEGDGWGDDLEIEIPAEQTAGGVEGAPYVVPTERPPLTQHWVETSSF
PAFHVAAGSFSTALGLLRRQIGLGDPAPLKTHMLDLWATVNASRPSWLIPSAMFPLTTYP
SEEQRGAASHSPLLPDYIPQLTERLRSGYSAFVGGHFADAQLHFVTALHQAVFTTCRGEK
QFTALREIVTTASEYARALNVQLHCRSTDGASKLSLELSLYFTHFKLQRNHLALALGQAM
SKAYKLKNLKIAASVARRLLDQDPPKQKAAQASAIVAEAERNPTDAEPVDYDERNPFVLC
SVSHRPMYKGTVDPIRCGYCFSPAMPKHKGEICPVCRIAFLGADCSGLANRT
NT seq 3579 nt   +upstreamnt  +downstreamnt
atgctgacgagatttgatgttcgctccagtcgtgtgaaagggataagtttccacaaaacg
cggccgtgggtgctttgcggactgcacaacggaaccgtgcaaatttgggactaccgcgtg
aacacgagcgttgataagtatgatgaacatagcggtgcggtacgtggtgtagactttcat
gatacgcaacctctatttgtttctggaggtgatgactacttggtgaaggtttggaactac
aaggcgcgccgttccctctttactttaaaggggcatatggactatgttcgatcaactttt
ttccaccatgagcagccatggattgtttcctcctccgacgatttcaccgtccgcatttgg
aattggcagaaccgaagcagtttggcttgtcttcctgggcatacgcactacgttatgtgt
gctcgatttcaccctcgggatgacattgtggtatcagcgagtcttgacaggacaattcga
gtgtgggacatctccagtttgcgggtccgaaagcaacagccgggaattgctcaagatctg
ctcggaaccagtgatgtgggtcttaaatattcattagagggccacgataaaggcgttaac
tgggtttgctttcatcccactcagccacttattgcatcggcctcagacgaccgcaccgtc
cgcgtctggagaattggtagtaccacctgcactgaggaggtacaactgcgggggcacacc
aacaatgtaagttgcgttgtgtacactaaggattatctcgtgtcaaacggtgaggatcga
acaatccgtgtttgggacgtgaaaacacgttgctcagtcatgctttttcgccgcgagtct
gaccgatactggatgctagcggcgttactagaaaagaaccttcttgctgctggtcacgac
tccggtgtgcacgtatttaagcttttccgcgaacgtcctgcgtcgactatgaatggtaac
gtgctacactacgtccacgggaacgtgctccattcatataacatggagtcaaagacagaa
tccaagttcagtctctcacgaaacttacacccacctctcaccctttcttgcaacccagtg
gataacatggctgttgttttttacgacaaggatggtgggtgtgcatcaaccttgacaatt
cccaaaccaggctgtacagtcgatgcagatgtgaagaagcgcctcggtattcttgccgct
ttgttttatgcccctaataaatgcgcgttcctcgacaagaataaaaatataattctgtgt
aatgcacacggcgatggtgaaaaagtgattaagcacgaaaaaaatttaaaggccctcttt
ccagggcctgcaggatatattttacgtcagaccgaggagggtatggagttgtttcacgtg
gctcagcagagtgtggccgcagaggttccaataacggagactaaatatgttgtatgggac
aaagactttacgaaggtggcgtttttgggtattaccaccgttcacgtcatgacaaggcgc
ttgaggagcattacctttttttcggaaccatcaataaggattaagagcgcggcatttgat
gagcaaagaaatatcctttattacactacgagtgaccacctcaagtattgtaacttgcgc
aacggggagtgcggtatcattcagtgtctcccttccccgatttatcttgttcgtgcgagt
ggtgatacggtctgggcgctttcccgcaatggaaaagttgttgtaatggagctgaacaat
ccggaacttaattttaaactaaagttgcagcagcaggcctacagggatgttattaaaatt
atacgccaaaaacaactcaggggacaggcgcttgttggttacctacacaaacatggccac
gacgaggttgcgctgtatctcgtctcagaccccttaactaggttcaacttagcggtagag
tgcggcgccatggatgtcgcaaagacagcagcactggaactaaaccaacccgcattgtgg
agaaggcttgcagaggcggcaacctcatatggggatattcatcttgcactcttggctcac
acaaagacaggaaactttcatggtgcaagtttcttgtctctcataactggaaacatgtct
gctttagatcacatggttaacacggtaagggatgagaacttcggtcttcactacggtatg
tatctcgacgatgctcatcagcgcattaaaacattgactaatactggacaacttccgctg
gcgtacgtggccgccaaatcagctgggttggatgaattagcagcttcgctcctcgaaaaa
atggatcctgatgttgcagaacgtatgcggcagacagaggtcaaagtacggttagaggcg
ccgacagtaacaccagttaccgacaattggcctatgttgcaggtggaggaatctgttttc
tccaggtttctgagggaacccaacttgctgagtggtgccggtgttgggattgaggaagag
gaatatgctgaagccggtgcagggtgggatgatgttgatgggcttcctaacagtgatgac
ggaagtggcggtttggatggggttgagggcagtgaagctgcagaaggtgacggttggggt
gacgatctcgaaattgagattcctgcagaacagactgcgggcggagtcgaaggtgcgcct
tacgttgtccctaccgaacgcccaccgctaacgcagcattgggttgaaacctcttcattt
ccggcatttcacgtcgccgctggttctttttcaacggcacttggtttattgcgtcgccaa
attggactaggggatcctgctcctctcaaaactcatatgttggatctgtgggccacagtc
aatgcgtcgcggcccagttggcttattccgtccgctatgttccctctgacaacatatcct
tctgaggagcagcgtggggcggcgtctcactctccgttgttgccagattatattcctcag
ctcactgaacggttgcgttccggttattctgcgtttgttggaggacacttcgcggatgcc
caactccattttgttaccgcattgcatcaagctgtgtttaccacctgcaggggtgagaag
caatttactgctcttcgagagattgttactaccgcctccgagtatgcgcgtgctcttaat
gtacagctacactgtcgtagtactgatggtgcttcgaaactttcactagagttgtcactc
tactttacacatttcaaacttcagcggaatcatcttgctctggcacttggtcaagctatg
agtaaagcctacaagttgaagaatttgaagatagcagcttcggttgcgaggaggcttttg
gatcaggatccaccgaagcaaaaggcagcacaggcttcagcaattgttgctgaagctgag
agaaatccaacagatgctgaacctgtggactatgacgagcgcaatccatttgtgctttgt
tctgtttctcataggccaatgtacaagggaacagttgatcccattcgatgtggttactgc
ttttcccctgctatgcctaaacataagggcgaaatatgtcccgtctgtcgtatagcgttt
cttggtgcggactgctctggacttgcaaatcgtacgtga

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