Trypanosoma brucei gambiense: TbgDal_IV3880
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Entry
TbgDal_IV3880 CDS
T06526
Name
(RefSeq) DNA-directed RNA polymerase II subunit 2,putative
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
tbg
Trypanosoma brucei gambiense
Pathway
tbg03020
RNA polymerase
tbg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tbg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TbgDal_IV3880
09124 Replication and repair
03420 Nucleotide excision repair
TbgDal_IV3880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tbg03021
]
TbgDal_IV3880
03400 DNA repair and recombination proteins [BR:
tbg03400
]
TbgDal_IV3880
Enzymes [BR:
tbg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TbgDal_IV3880
Transcription machinery [BR:
tbg03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
TbgDal_IV3880
DNA repair and recombination proteins [BR:
tbg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
TbgDal_IV3880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
C1_1
Motif
Other DBs
NCBI-GeneID:
23859826
NCBI-ProteinID:
XP_011772977
UniProt:
C9ZN35
LinkDB
All DBs
Position
4:complement(951070..954639)
Genome browser
AA seq
1189 aa
AA seq
DB search
MDDELLLQLNEVEEITDDDVDDIHRVAGMENVNTADIDSEDIWEIISSFFREKGLVHQQV
DSYNDFLLRIPRMARSLLEIVPRQDDQFDPGVHVESEPDQYRLSLEDVVVGNPSHEMSGF
SRTEMHPLFPNECRLRDLTYDAVAQVTLAIRVYRSREEQPYRTFLQNMELGRIPIMLKSM
RCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKVLIAQERQAANHVYAFTRPKGLLCEIK
SIVEGSLNKPRTLQILMPYKKSGPGHGYENLLCRVAQMDELIPLFVLFRALDMGSDKEIL
QTVVPDLKDVAMLEMLRGSMEDASTLEIFTRDEALWFIGKRLGKQDSRENLQREAQDLLM
RDLLPHMGVDCAADRGKCLFIGYMVHRLLLLALGRREDTDRDFLGHKRIDVAGSLLTFQL
NQFLVQVRREMAQTVHDYSTNRGGVVSFGRILHNRLITDGMRRCLATGNFGDLKSGNIKT
GVSQTLNRLTYSSSLSNLRRIQNPISASSKATRPRNLHCTQWGYICPVETPEGGSIGLLK
NLALMCLVSRGSDHTGVVQAVQSRITGFHSIALSDLADVRVARVFVNGTLIGVHGDPERL
LRDLRARRRGGELSNEVSIVRDIRDREIRVFSDGGRCLRPLFVVEKSRIKLQKAGIGELL
EPSTTLGGRREISWNKVMKKGYVELIDCEEEDSLLIAMVPSEVGKNYFYSHCEMDPSMIL
GICASIIPYPNHNQSPRNTYQSAMGKQAMGIYASNFNMRMDTTAHVLFYPQKPLVRTKAM
SYMRSNDLPAGHNAIVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKASEEKKREG
REMFEIPDRKVCHVKRADYTKLDTDGLIKPGMPVIGGDIIVGKTIPVPKTLSEGSPVSDT
RILKRDCSISSRAAEKGVVDRVMLTENKGNRFTKVRIRTIKIPNIGDKFCSRHGQKGTNG
IQFRQEDMPFNHDGISPDLIINPHAIPSRMTVAHLIETLAGKVACYKGGEVYATPFCSVV
VEDFGKALTQLKLNRYGNERLYNGHTGLPLDHLIFFGPTYYQRLKHLSSDKIHARPRGPL
QPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVCNMCGTICA
ADTDQNLYKCQGCDNDSHISQVLMPYACKLLFQELMSMAILPRLGTGPL
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgaactacttctacagctcaacgaggtggaggaaatcacagatgatgatgtt
gatgacatacatcgtgtggcgggcatggagaacgtgaacacagccgatattgacagtgaa
gacatatgggagattatctcatcgtttttcagggagaagggtctcgtgcaccagcaggta
gattcatataatgacttccttcttcgtattccccgcatggcgcggagccttcttgaaatt
gtacccaggcaggatgatcagttcgacccgggcgttcacgtggagagtgagccagatcaa
taccgcctgagcctggaggacgtcgtagtgggaaacccctcccacgaaatgtcgggcttc
agccgcacggaaatgcatccccttttccctaatgagtgtcgactgcgggacttgacgtat
gacgctgttgcgcaagtaacactcgccattcgcgtgtaccgatcgcgtgaggagcagccg
tatcgaacatttcttcagaatatggaactcggtcgcattccgattatgctgaagtccatg
cggtgcaatcttctgaacaaggatgaggaagaattaccaaggctcaacgagtgtccacat
gaccagggtggttactttattgttaatggaacggaaaaggtgcttatcgcgcaggaacgt
caagcagccaaccatgtgtacgcgtttacgcgccccaagggtctattatgtgaaatcaaa
tccattgttgaaggttctcttaacaagccaagaacccttcaaatattaatgccgtacaaa
aagagtggtcccggtcatgggtacgagaatctattatgtcgtgtagcacaaatggatgaa
ctgattccgctttttgttttgttccgagcgctagacatgggatctgataaggagatcctg
cagacagttgtcccggatttaaaagatgtcgccatgctcgaaatgcttcgcggctccatg
gaagatgcaagtacgttggaaatatttacacgtgatgaggccttgtggttcattggcaag
cgcctcgggaagcaggacagccgtgaaaacctgcaacgtgaagcccaggaccttctcatg
cgggatttacttccccacatgggggtggactgcgctgctgatagaggcaagtgcctcttc
atcggctacatggtgcaccggctgctgctgttggcgctcggtcgtcgtgaggataccgac
cgtgactttttgggtcacaagcgtatcgatgttgcggggtctcttctaacctttcagcta
aatcaattcctcgttcaggtgaggagggagatggcacaaacggtgcatgactactccacc
aaccgcggtggtgttgtgagcttcggccgtattttgcataatcgactcatcacagacggt
atgaggcgctgcttggctaccggtaacttcggtgacttgaagtccggtaacattaaaact
ggtgtgtcgcagacgcttaaccgattgacttattcgtcatctcttagtaacctccgtcgt
attcaaaatcccatctctgcgtccagtaaagccacacggccccgaaatcttcattgcaca
cagtggggctacatatgcccggtggaaacaccggagggtggttccattggtctgctgaaa
aacctggcgctcatgtgcctcgtgtctcggggaagtgatcacaccggtgtagttcaggcc
gtccagtcgcgcattacagggttccactcgatcgccctctcggacctggcagacgtccgt
gtggcgcgcgtgtttgtgaatgggacactcatcggcgtgcacggggatcccgagcgcctg
ctccgagacttgcgtgcacggcgccgcggcggggagcttagtaatgaagtaagtattgta
cgtgatattcgggaccgcgagatccgcgtcttctcagatggtggaaggtgtttgcggcca
ttgttcgtggttgagaaatcacggatcaagttacagaaggcgggaattggcgagcttctt
gagccctccacaacattgggtggtaggcgcgaaatttcgtggaataaggtaatgaagaaa
ggttacgtcgagctcattgactgtgaagaggaggactccctcctcatcgccatggtgccg
agcgaggtgggaaagaactatttctactcgcactgtgagatggacccgtcaatgatcctc
ggtatctgtgcctccattattccttacccgaaccacaaccagtctccacgaaacacgtac
cagtctgctatgggtaaacaggctatgggaatatatgcatccaactttaacatgcgcatg
gatacaacggcccacgttctcttctacccacagaagccgcttgtgcgcacaaaagcaatg
tcatacatgcgaagcaacgatcttccagcaggacacaacgcaatagtcgctatcgcgtgt
tactcaggttataaccaggaggactccatcattatgagtcgctccgctgtggaacgtggt
tttttccggagcgtattttggcgctcatacaaggcttcagaggagaagaaacgggagggt
cgggagatgtttgagatcccagacagaaaggtgtgccatgtaaaacgtgcggattacact
aaactcgacactgatggcctcattaaacctggcatgcccgttattggtggagatatcatc
gtgggtaaaacgattcctgtgcccaaaaccctatccgaaggatctcctgtaagcgacact
cgaattctcaagcgcgattgcagcattagttcgagagcagccgaaaagggtgttgtcgat
agagtgatgttaacggagaacaaagggaatcgttttactaaagtgaggatccgtaccatc
aaaataccaaacattggagacaaattctgtagccgccacggacaaaaaggaactaacggt
atccagttccgccaagaagatatgcccttcaaccacgatggtatatcaccggacttgatc
attaacccacacgctatcccttctcgtatgacagtagcgcacttgatcgagacactggct
ggaaaagtggcttgctataaaggcggtgaggtgtacgccacgcctttttgttccgttgtc
gttgaagatttcggaaaggcgctgacgcagcttaaactcaaccgatacggcaatgagcgt
ttatacaatggccataccggcttaccacttgatcatctcatcttctttggtcccacatat
taccagcggttgaagcacttatcgagcgacaaaattcacgcacggccccgtggacctctt
cagccgctggtgcggcagccgaccgaaggacgagcacacgagggcgggcttcgattcggt
gagatggaacgtgattgcatgctttcgtacggcgcttcgcagtggcttcgagagcggttg
ttccgcgtaagtgattattactccgtgcacgtatgcaatatgtgtgggactatttgcgca
gcggacacggaccagaatctgtacaagtgtcaaggttgtgacaacgactcacatatttcc
caggttcttatgccgtatgcttgcaagttgctctttcaagagctgatgtcgatggcgatt
ctcccccgtcttggcacagggccgttgtaa
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