Trypanosoma brucei gambiense: TbgDal_IX5210
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Entry
TbgDal_IX5210 CDS
T06526
Name
(RefSeq) PABP1
KO
K13126
polyadenylate-binding protein
Organism
tbg
Trypanosoma brucei gambiense
Pathway
tbg03015
mRNA surveillance pathway
tbg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TbgDal_IX5210
09123 Folding, sorting and degradation
03018 RNA degradation
TbgDal_IX5210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbg03019
]
TbgDal_IX5210
03041 Spliceosome [BR:
tbg03041
]
TbgDal_IX5210
Messenger RNA biogenesis [BR:
tbg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
TbgDal_IX5210
mRNA cycle factors
Stress granule specific factors
TbgDal_IX5210
Spliceosome [BR:
tbg03041
]
Complex C
Other components
Complex C specific factors
TbgDal_IX5210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_3
RRM_7
RRM_PARP14_3
DUF4523
Motif
Other DBs
NCBI-GeneID:
23860544
NCBI-ProteinID:
XP_011776711
UniProt:
C9ZYE6
LinkDB
All DBs
Position
9:complement(<1142079..>1143779)
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AA seq
566 aa
AA seq
DB search
MTIAAQGVPSGPSATKPLQVASLYVGDLDPAINEPQLVDIFKPYGTILNVRVCRDIITQR
SLGYGYVNYDDVNSASKAMEELNFKRVGEKCIRIMWQQRDPALRYSGSGNIFVKNLKEEV
DSRELSLIFKKFGEILSCKVMDDESGKSRGYGFVHFKDDDAAKAAIEKMNGDKEHADADK
AALYVANFIRRNARLAALVANFTNVYIKQLLPTVDKDVIEKFFSKFGGITSAAICKDKNG
RAFAFCNFEKHDDAVKAIEASHDQEVEGVTQPGEKLYVQRAQPRSERLIALRQKYMQCQS
LGNNLYVRNFDAEFTEKDLNELFKEYGVIRSCRVMTDANGISRGFGFVSFENADQANAAL
REMNGRMLNGKPLVVNIAQRRDQRLTMLKLQLQQRLQMMMHHMHPPPFGMPGHPLQRRNA
RSGGRGNRPHPRQQQPQPQPEPQPPLATTVPPAAAHSVMFTAPSMGFSAVPRTPQASPAI
APDTPPLPPISAEDLQQMSVDEQRAALGDRLYIKVHELAPDHAPKITGMFLEMNPKEALA
LLSNPKLMHEKVTEALCVLKVHASSA
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgacaatcgctgcacagggggttccctccggtccctccgccacgaagccgctacaagtg
gcttcattgtacgttggcgacctcgatcctgctattaatgagccacagttggtggacatc
tttaaaccgtatggaactattctcaacgtccgcgtctgccgtgacatcatcacgcagcgc
tcattgggatacggttatgtgaactatgacgatgtgaatagcgcgtcgaaagccatggag
gaactcaatttcaagcgagtgggtgaaaagtgtatccgaatcatgtggcagcagcgtgac
ccagcactgcggtacagcggaagtggtaatatattcgtcaaaaaccttaaggaggaggta
gacagtcgggaattgagtttgatattcaagaagtttggtgagatcctttcctgcaaggtg
atggacgatgagagcgggaaaagccgcggttacggctttgtccacttcaaggacgacgat
gcagccaaagccgccatcgagaaaatgaacggtgacaaggaacacgccgatgcggataag
gcagcactgtatgttgccaatttcattcgtcgtaatgcccgtcttgccgcacttgtggcg
aacttcacgaacgtgtacataaagcagctccttcccacagttgataaagacgttatcgaa
aaattcttttcgaagtttggcggcatcacgagcgcagcgatatgcaaagacaagaacggt
cgtgcattcgccttctgtaactttgaaaaacacgatgacgcagttaaagccattgaggcg
tcacatgatcaagaggtggaaggtgttacgcagcctggggagaagttgtacgtgcagcga
gctcagccgagaagtgagcggcttattgcactccgccaaaaatacatgcagtgccagtca
cttggaaacaacttatacgtccgtaactttgacgctgagttcacggaaaaagacctcaat
gaactgttcaaagagtacggtgttattcgcagctgccgtgtgatgaccgatgccaatggc
ataagtcgcggtttcggctttgtaagtttcgaaaatgcggatcaggcaaacgccgcactc
cgtgaaatgaatggtcgtatgctgaacgggaaacctctcgttgtcaacattgcgcagcgc
cgtgaccagcgcctcaccatgctgaagttacagctccagcaacgcctgcaaatgatgatg
caccatatgcatcctcctccgttcggtatgccggggcatccactgcagagacgcaatgcc
cgcagtggaggccggggcaaccgtccgcacccacgtcaacaacagccacaacctcaacct
gagccgcaaccgccactcgccactacggtgccaccagcagcggctcacagcgttatgttt
accgcaccctcaatgggtttctccgccgtaccccgtactcctcaggcatcacctgccatc
gctcccgatacaccaccgctgccgcccatctcagctgaagatctgcaacaaatgtcggtg
gacgaacaacgcgccgctctgggtgacaggctctacattaaggtgcatgagcttgctccg
gatcacgcaccgaaaattactggcatgttccttgagatgaaccctaaggaggcgttagcc
ctcctttccaaccctaaactaatgcacgagaaggttacagaagccctctgtgtgctaaag
gtacacgcctcaagcgcttaa
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