Trypanosoma brucei gambiense: TbgDal_V1670
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Entry
TbgDal_V1670 CDS
T06526
Name
(RefSeq) Csl4p homologue, putative
KO
K07573
exosome complex component CSL4
Organism
tbg
Trypanosoma brucei gambiense
Pathway
tbg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TbgDal_V1670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbg03019
]
TbgDal_V1670
Messenger RNA biogenesis [BR:
tbg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TbgDal_V1670
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
TbgDal_V1670
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
KOWx_SPT5
Motif
Other DBs
NCBI-GeneID:
23861145
NCBI-ProteinID:
XP_011773316
UniProt:
C9ZNQ1
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All DBs
Position
5:363038..363967
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AA seq
309 aa
AA seq
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MAVIVKTGKCVSPGDVLYATDIYDAIGTIVVAASDTGAVSAGNHADDAIIAGTGCYSRVV
SKPDGAVSSQIITTLLGIVQWSGNVVSVRQPTKRARDATTIEVVSLNALKDAGTCGDSAT
PRLSTPGEATSSVSETPASTAVSTAPKSLWISTSVFGPRMGDNVHLRVVRVSRSFAYGEI
IAVNGTWCSNSGSNGGGGGALGGFRGVIRMEDIRPFKPRKDQLSPPPPADAFQDGDVVVA
TVLSQSDVRQYQLSTVAEHCGVVEAFTVLNSNGRERRVRLRHIPECRDMMKCPLSGNLHR
RWCPLIRLV
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atggcagtcatagtaaagactggtaagtgcgtatcaccaggagatgttttgtatgctact
gacatctatgatgcaataggcaccatagtggtggctgcatccgataccggagctgttagt
gctggtaatcatgctgacgatgccattattgctgggaccggatgctattctcgtgtcgtt
tccaagcctgatggtgcggtgtcaagccaaatcattacgacacttctgggcattgtgcag
tggagtggcaatgtcgtttcggtacggcagccgacaaaaagggcccgcgatgccacgaca
attgaagtggtgtcgcttaacgctttaaaggacgcgggtacgtgtggagactcggctacg
ccacgtttgtcaacgccgggggaagcaacttcatcagtgagcgaaacaccggcctcaact
gcggtgtcgactgcgccaaagtcattgtggatttcgacatcagtattcgggccccgtatg
ggagataatgttcatctgcgtgtcgtccgcgtatcccgctccttcgcgtatggcgagatc
atagccgtaaacggaacgtggtgcagtaacagtggtagcaacggtggtggtggcggggca
ctgggtggttttcgaggtgttattcggatggaggacattcgccccttcaagccccgaaag
gatcaactgtcaccaccgccacctgctgatgcttttcaggatggtgatgtggtggttgca
acggtgttgtcacagtcggatgtgcggcagtaccaactgagtactgtagctgagcattgt
ggtgttgtggaggccttcacagtgttgaacagcaacggtcgcgagaggcgcgtgcgattg
cggcacattcccgagtgtcgcgacatgatgaagtgcccactaagcggtaatttgcaccgc
cggtggtgcccgctaattcggttagtctaa
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