Trypanosoma brucei gambiense: TbgDal_V1840
Help
Entry
TbgDal_V1840 CDS
T06526
Name
(RefSeq) hypothetical protein, conserved
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tbg
Trypanosoma brucei gambiense
Pathway
tbg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tbg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TbgDal_V1840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbg03019
]
TbgDal_V1840
03041 Spliceosome [BR:
tbg03041
]
TbgDal_V1840
Messenger RNA biogenesis [BR:
tbg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
TbgDal_V1840
Spliceosome [BR:
tbg03041
]
Complex B
Other components
Prp19-related factors
TbgDal_V1840
Complex C
TbgDal_V1840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
HAT_PRP39_N
HAT_Syf1_M
TPR_14
Suf
NRDE-2
Motif
Other DBs
NCBI-GeneID:
23861164
NCBI-ProteinID:
XP_011773333
UniProt:
C9ZNR8
LinkDB
All DBs
Position
5:395987..398716
Genome browser
AA seq
909 aa
AA seq
DB search
MCAYARVFACFKVFSVDPCCHPTLGGGGDTVAVIWFLLILVDSLPPLFHHAFIFLAPNFF
NITCAACNHPLSLLPFFFFRFFLEEGGEKMGTTSTDTLELEVLRNPSNVRGWLQFIRSIL
CSDYPNQVSKANAVNVAYERALRANGYSYKLWMGYISYRRENTRELTSPNEWFRSLRDIY
DRAVEKLPMMPLLWTSFIEFAMDGSVAPRITLTRHVITRALEALPFTQHHRIWRLAKLWV
SRPHVPMPTATYIWRLYLLYDPSTENQRNYFHMLWEKGNASDFLVECAAFLLRDSTSHGG
LLRDIAFWETVRTALETKGLCFGGDISQVEKIVQMAADYCASPAEFRLSYAVFLANQGEL
SMARETLWAILNDVDNPAVFCRAFAAALAFESQIIDSLAMDSSIHALDEVKYQQLREKLC
GDVSDPLYHLTRLTQQHPMLLNQLQLRADRHCTALWLKRIEILKEMECNGVATSSDVIAL
YRQAITQCTSGMPNVEAATAQLFESYACYLWENNLRTDAVAVADEGAWFVKFSSTTSNVL
LMGLVVEFSQLTDPARTLDKLVSRLVKATNVSNSIRSKGLARQVAVKNLARDPRAWVLAV
DVAFHRLLLKNTGESGGRSNEELKNLISLFCNSSGYTAEGACYLACRLWQSGDVSAAFQE
FERALVAFAAAPLAVLHILQQYLSCLCVSFGTRLPLHRFREFSKLGLDVAQFTMRSSPVS
TVEFLLNCVTLESRLGFSGSAVQIARECLHLALKHQAEYDSLLFGVLDAVLEVTFRLHGS
QALRHYCAELLERQKLTPQLIQRLALWWAAVERRTGNADRAHTVMEACCKSQDPSSSHGA
VFWSMWESICNTVKQFEGVHRRKQQAALKYSNGNNSADAAVDGFDGSKNNNVGASGNEAI
EVVPVPALT
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgcatacgcgcgtgtgtttgcatgcttcaaggtgttctcagttgatccctgttgc
caccctacgttaggtggtggtggtgacactgtggccgtcatttggtttctacttatcctc
gtcgactctctacctcctctttttcatcacgcttttatttttcttgcccctaatttcttt
aacattacttgcgctgcttgcaatcaccccttgtcgctattgcctttttttttttttcgt
ttcttcctcgaggaaggtggtgaaaaaatgggaacaacatccacagataccctggaactg
gaggtgctgcgcaacccatcaaatgtgaggggttggctacagttcattcgaagtattctg
tgttcggactaccccaatcaggtgtctaaggcaaatgcagttaacgtggcctatgaacgt
gccctccgcgccaacggttactcgtacaagctctggatgggttatatttcataccggcgc
gagaacacacgagagctcacttcccctaatgagtggttcaggtctctgcgggacatctat
gatcgagcggtggaaaaacttcccatgatgccactgttgtggacttctttcattgagttc
gctatggatgggtcggttgcacctcggattacactcactcggcacgtgataactagggca
ttggaggcacttcccttcactcagcatcaccgtatatggcggcttgctaagctttgggtt
agccgaccacacgtacccatgccaacggcaacgtatatatggcggctgtacttgctgtac
gatccgtcaactgaaaatcaacgaaactactttcacatgctctgggagaaggggaatgca
tcggactttctcgttgagtgtgcggcatttttgttgcgggatagcacatcgcatgggggt
ctgcttcgtgatatcgctttctgggaaacagtacgcacagctttggaaaccaagggactt
tgcttcggcggtgatatttcacaggtggagaaaattgtccagatggcggcggattactgc
gcgtcgccggcagagtttcgcctttcctatgctgttttcttggccaaccagggagagctg
agtatggcacgtgagacactgtgggcaattttaaatgatgttgacaatcctgctgttttt
tgcagggctttcgccgcagctcttgcgtttgagagccaaatcattgactccctggcgatg
gactcctccatccatgctcttgacgaggtaaagtatcagcagctgcgggagaagctctgt
ggagatgtatcggaccccttgtaccatctaacccgccttactcagcagcatccaatgctg
ttgaatcagcttcagctacgggcagatcgccactgcacggcactctggctgaagcgcatc
gaaattttgaaggaaatggagtgtaatggagtcgccacgtcaagtgatgtcattgcgttg
tatcggcaggccatcacgcagtgcacctccggaatgccgaatgttgaggcggctacagcc
caactgttcgagtcgtatgcgtgctatttgtgggaaaacaatcttaggacggacgcagtg
gcagtagcggatgagggtgcgtggtttgttaaattttcttccactactagcaatgtgctt
ttgatggggttggtcgtggagtttagtcagcttacagatcccgcgcggacactggataag
cttgtctcaagacttgtcaaggcaacgaatgtgtccaactctattagatccaaaggactt
gccagacaagtggcggtgaagaacttagcaagggatccccgtgcatgggtgcttgccgtt
gatgtagcctttcatcgattgttgttgaagaacaccggggagagtggtggaaggagcaac
gaagaactaaaaaatttaataagccttttctgcaactcttcggggtacacggcggagggt
gcctgttatctggcatgccgcctgtggcaaagtggcgatgtgagtgcagctttccaagag
tttgagcgcgcgctggtggcatttgcggctgctccgttggccgttcttcacattcttcag
cagtacttaagttgtttatgtgtttccttcgggacacggttgcctctccaccgatttcgg
gagttctccaaattgggtctggacgttgcacagttcaccatgcgatcatcccccgtgtct
acggtggagttccttcttaactgcgtcactttagaatctcggctaggtttttccggaagt
gccgttcaaattgcgcgggaatgtcttcacttagcgttgaaacatcaagcggagtatgac
agtcttttgttcggcgttttggatgccgtcctcgaggtgacgtttagattgcatggaagc
caagcactgcgtcactattgtgcggagttgctggaaagacagaaactaacaccacagttg
attcagcgactggctttatggtgggctgcggtggaaaggcggactggtaatgcggatagg
gcccacaccgtgatggaggcctgttgtaagtcacaagacccgagcagtagtcatggtgct
gttttctggagtatgtgggagtcgatatgcaacaccgtaaagcagtttgagggggtgcac
aggcggaagcagcaggcggcactcaagtacagtaatgggaataattcggctgacgctgcc
gtggatggctttgatggaagtaaaaacaataatgtcggtgccagtggcaacgaagctatt
gaggttgtaccggtgccagcacttacgtga
DBGET
integrated database retrieval system