KEGG   Trypanosoma brucei gambiense: TbgDal_V1840
Entry
TbgDal_V1840      CDS       T06526                                 
Name
(RefSeq) hypothetical protein, conserved
  KO
K12867  pre-mRNA-splicing factor SYF1
Organism
tbg  Trypanosoma brucei gambiense
Pathway
tbg03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tbg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    TbgDal_V1840
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tbg03019]
    TbgDal_V1840
   03041 Spliceosome [BR:tbg03041]
    TbgDal_V1840
Messenger RNA biogenesis [BR:tbg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     TbgDal_V1840
Spliceosome [BR:tbg03041]
 Complex B
  Other components
   Prp19-related factors
    TbgDal_V1840
 Complex C
    TbgDal_V1840
SSDB
Motif
Pfam: HAT_Syf1_CNRKL1_N HAT_PRP39_C HAT_Syf1_CNRKL1_C HAT_PRP39_N HAT_Syf1_M TPR_14 Suf NRDE-2
Other DBs
NCBI-GeneID: 23861164
NCBI-ProteinID: XP_011773333
UniProt: C9ZNR8
LinkDB
Position
5:395987..398716
AA seq 909 aa
MCAYARVFACFKVFSVDPCCHPTLGGGGDTVAVIWFLLILVDSLPPLFHHAFIFLAPNFF
NITCAACNHPLSLLPFFFFRFFLEEGGEKMGTTSTDTLELEVLRNPSNVRGWLQFIRSIL
CSDYPNQVSKANAVNVAYERALRANGYSYKLWMGYISYRRENTRELTSPNEWFRSLRDIY
DRAVEKLPMMPLLWTSFIEFAMDGSVAPRITLTRHVITRALEALPFTQHHRIWRLAKLWV
SRPHVPMPTATYIWRLYLLYDPSTENQRNYFHMLWEKGNASDFLVECAAFLLRDSTSHGG
LLRDIAFWETVRTALETKGLCFGGDISQVEKIVQMAADYCASPAEFRLSYAVFLANQGEL
SMARETLWAILNDVDNPAVFCRAFAAALAFESQIIDSLAMDSSIHALDEVKYQQLREKLC
GDVSDPLYHLTRLTQQHPMLLNQLQLRADRHCTALWLKRIEILKEMECNGVATSSDVIAL
YRQAITQCTSGMPNVEAATAQLFESYACYLWENNLRTDAVAVADEGAWFVKFSSTTSNVL
LMGLVVEFSQLTDPARTLDKLVSRLVKATNVSNSIRSKGLARQVAVKNLARDPRAWVLAV
DVAFHRLLLKNTGESGGRSNEELKNLISLFCNSSGYTAEGACYLACRLWQSGDVSAAFQE
FERALVAFAAAPLAVLHILQQYLSCLCVSFGTRLPLHRFREFSKLGLDVAQFTMRSSPVS
TVEFLLNCVTLESRLGFSGSAVQIARECLHLALKHQAEYDSLLFGVLDAVLEVTFRLHGS
QALRHYCAELLERQKLTPQLIQRLALWWAAVERRTGNADRAHTVMEACCKSQDPSSSHGA
VFWSMWESICNTVKQFEGVHRRKQQAALKYSNGNNSADAAVDGFDGSKNNNVGASGNEAI
EVVPVPALT
NT seq 2730 nt   +upstreamnt  +downstreamnt
atgtgtgcatacgcgcgtgtgtttgcatgcttcaaggtgttctcagttgatccctgttgc
caccctacgttaggtggtggtggtgacactgtggccgtcatttggtttctacttatcctc
gtcgactctctacctcctctttttcatcacgcttttatttttcttgcccctaatttcttt
aacattacttgcgctgcttgcaatcaccccttgtcgctattgcctttttttttttttcgt
ttcttcctcgaggaaggtggtgaaaaaatgggaacaacatccacagataccctggaactg
gaggtgctgcgcaacccatcaaatgtgaggggttggctacagttcattcgaagtattctg
tgttcggactaccccaatcaggtgtctaaggcaaatgcagttaacgtggcctatgaacgt
gccctccgcgccaacggttactcgtacaagctctggatgggttatatttcataccggcgc
gagaacacacgagagctcacttcccctaatgagtggttcaggtctctgcgggacatctat
gatcgagcggtggaaaaacttcccatgatgccactgttgtggacttctttcattgagttc
gctatggatgggtcggttgcacctcggattacactcactcggcacgtgataactagggca
ttggaggcacttcccttcactcagcatcaccgtatatggcggcttgctaagctttgggtt
agccgaccacacgtacccatgccaacggcaacgtatatatggcggctgtacttgctgtac
gatccgtcaactgaaaatcaacgaaactactttcacatgctctgggagaaggggaatgca
tcggactttctcgttgagtgtgcggcatttttgttgcgggatagcacatcgcatgggggt
ctgcttcgtgatatcgctttctgggaaacagtacgcacagctttggaaaccaagggactt
tgcttcggcggtgatatttcacaggtggagaaaattgtccagatggcggcggattactgc
gcgtcgccggcagagtttcgcctttcctatgctgttttcttggccaaccagggagagctg
agtatggcacgtgagacactgtgggcaattttaaatgatgttgacaatcctgctgttttt
tgcagggctttcgccgcagctcttgcgtttgagagccaaatcattgactccctggcgatg
gactcctccatccatgctcttgacgaggtaaagtatcagcagctgcgggagaagctctgt
ggagatgtatcggaccccttgtaccatctaacccgccttactcagcagcatccaatgctg
ttgaatcagcttcagctacgggcagatcgccactgcacggcactctggctgaagcgcatc
gaaattttgaaggaaatggagtgtaatggagtcgccacgtcaagtgatgtcattgcgttg
tatcggcaggccatcacgcagtgcacctccggaatgccgaatgttgaggcggctacagcc
caactgttcgagtcgtatgcgtgctatttgtgggaaaacaatcttaggacggacgcagtg
gcagtagcggatgagggtgcgtggtttgttaaattttcttccactactagcaatgtgctt
ttgatggggttggtcgtggagtttagtcagcttacagatcccgcgcggacactggataag
cttgtctcaagacttgtcaaggcaacgaatgtgtccaactctattagatccaaaggactt
gccagacaagtggcggtgaagaacttagcaagggatccccgtgcatgggtgcttgccgtt
gatgtagcctttcatcgattgttgttgaagaacaccggggagagtggtggaaggagcaac
gaagaactaaaaaatttaataagccttttctgcaactcttcggggtacacggcggagggt
gcctgttatctggcatgccgcctgtggcaaagtggcgatgtgagtgcagctttccaagag
tttgagcgcgcgctggtggcatttgcggctgctccgttggccgttcttcacattcttcag
cagtacttaagttgtttatgtgtttccttcgggacacggttgcctctccaccgatttcgg
gagttctccaaattgggtctggacgttgcacagttcaccatgcgatcatcccccgtgtct
acggtggagttccttcttaactgcgtcactttagaatctcggctaggtttttccggaagt
gccgttcaaattgcgcgggaatgtcttcacttagcgttgaaacatcaagcggagtatgac
agtcttttgttcggcgttttggatgccgtcctcgaggtgacgtttagattgcatggaagc
caagcactgcgtcactattgtgcggagttgctggaaagacagaaactaacaccacagttg
attcagcgactggctttatggtgggctgcggtggaaaggcggactggtaatgcggatagg
gcccacaccgtgatggaggcctgttgtaagtcacaagacccgagcagtagtcatggtgct
gttttctggagtatgtgggagtcgatatgcaacaccgtaaagcagtttgagggggtgcac
aggcggaagcagcaggcggcactcaagtacagtaatgggaataattcggctgacgctgcc
gtggatggctttgatggaagtaaaaacaataatgtcggtgccagtggcaacgaagctatt
gaggttgtaccggtgccagcacttacgtga

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