Trypanosoma brucei gambiense: TbgDal_V3070
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Entry
TbgDal_V3070 CDS
T06526
Name
(RefSeq) nonsense mRNA reducing factor 1, putative
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tbg
Trypanosoma brucei gambiense
Pathway
tbg03013
Nucleocytoplasmic transport
tbg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tbg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
TbgDal_V3070
03015 mRNA surveillance pathway
TbgDal_V3070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbg03019
]
TbgDal_V3070
Enzymes [BR:
tbg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
TbgDal_V3070
5.6.2.5 RNA 5'-3' helicase
TbgDal_V3070
Messenger RNA biogenesis [BR:
tbg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
TbgDal_V3070
mRNA cycle factors
Common to processing body (P body) and stress granule
TbgDal_V3070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
UPF1_Zn_bind
AAA_11
AAA_30
AAA_19
ResIII
Viral_helicase1
UvrD-helicase
PhoH
Helicase_RecD
DEAD
AAA_22
SLFN-g3_helicase
AAA
AAA_16
nSTAND3
NPHP3_N
TIP49
RuvB_N
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
23861301
NCBI-ProteinID:
XP_011773456
UniProt:
C9ZP41
LinkDB
All DBs
Position
5:complement(626029..628557)
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AA seq
842 aa
AA seq
DB search
MFSEHASDERALGVATTPVASGETDKKPSCSYCSEESPTCLAFCNGCSKWFCNGSNGTSG
SHIILHLVKSGHNSLKLHAENSLGDSTLECYICRSSNIFSLGFMPSKEEAVVVLVCREPC
LHSKTLRDLNWDSSTWLPLIEERRLLPWICSIPSTLRRPLTLHDIKALEMSWEQKVKEFV
DPVESVPEVPLYFESGTKYVEVFSGLIALDSQGARDSKDTSFEGIQCTQQKKIGGRHFFV
LKPFPLFDVGVNRGDNVSIRVKGSESSLSGTITEVSATSVDNEHAVFVTDTTARSVDKKA
VNEILAATTVTISPEYNGVADKRKMEALQQFARSEGSVSAYLYFTILGQKERAAHRNSGF
DTEPEPRGHHNLNYSQEQALRVALRNPLTLIQGPPGTGKTSTSVAIIRELHSHVKSRILV
CAPSNVAVDHLAQRVSGTGLKVVRLQAKYRNDIPCSVESIGLERQVRDYINASSGLERLK
ELLDSMQTGKSLNDKDYGTYKDGVEKIERLILRNADVVCCTCIGAGDYRLKTMKFKHVLI
DEATQGTEPEVLIPLVRGAKQVILVGDHCQLRPLVFSTAAEKAGYQRSLFERLVLMGHRP
VRLDVQYRMNPSLSFFPSHHYYEGTLQNGVTAEQRDASEVFPWPDVTKPIFFYNATGNEE
LGSNGRSYLNRAEAALTEQIVTKLIQGGVEPGDIGVITPYRSQCRYLRSYLSRSGRLPME
VYDRVEISSVDAFQGREKEFIILSCVRSNHRQGAGFVTDGRRLNVSLTRAKRGLIIMGNV
QLFSRYPGWHELLVHMNSLSLIVEGPIDDLVPSAVVLQKPRKRGGKLKGEESDSPLFLPG
ES
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgttcagtgagcatgctagtgatgaacgagcgctcggtgttgctaccacaccggttgca
agtggggagacggacaagaaacccagctgctcgtactgtagcgaagagagcccgacctgc
ttagccttttgcaatggatgctcaaaatggttttgtaatgggtcaaatggtaccagcggt
tctcacattattcttcacctcgtaaaaagtgggcataattcattgaaactgcacgcagag
aattcgcttggtgattccactttagagtgctacatatgtcgatcttcgaatattttttcc
ttgggatttatgccttcaaaggaggaagctgtcgttgtacttgtctgtcgcgaaccgtgt
cttcattcgaagacgctacgtgacctaaactgggactcttctacttggctacccctgata
gaagagcggaggttgcttccatggatttgcagtattcccagtaccctgcgccgaccactg
acgttgcatgacattaaggcacttgaaatgagttgggaacagaaggtcaaagaatttgtt
gatcctgttgagagtgtcccagaggttccattatattttgagagtggaacgaaatacgtg
gaagtattttcgggtttaattgctcttgattcccaaggggcaagagattcaaaggatact
tcttttgagggtatccagtgcacacaacagaagaagatcggcggtaggcattttttcgtg
ttgaaaccgttccccctcttcgacgtaggtgtaaatcgcggtgataacgtatcaatccgc
gttaagggaagtgaaagcagtctatctggcactatcactgaagttagtgcaacttcagtc
gacaacgaacacgctgttttcgtaactgataccacagcacgttcggtggataagaaggct
gtgaatgagattcttgctgcaaccactgtaactatttctccagagtacaacggggttgct
gataaacggaagatggaagcactgcagcagtttgcacggtctgaaggctcggtctccgct
tatttgtacttcaccattcttgggcaaaaggaacgtgctgcgcacaggaattctgggttt
gataccgaacctgagccgagggggcaccacaatttgaattattcccaagaacaggccttg
agagtggccctcagaaatccattgacccttattcaaggaccgcccggcacagggaaaacg
tcaacaagtgtggcaattattcgggagttgcacagtcacgtaaagtcgaggattttggtt
tgcgctccaagtaatgttgcagtcgaccacctagcacaaagagttagtggaactggatta
aaagttgttcgattgcaagctaagtaccgcaacgacattccttgctctgtggaaagtatt
gggcttgaaagacaggtaagagattacattaacgcgagttcaggtctcgagagattgaaa
gaacttctggactcgatgcaaacaggtaagagtttaaatgacaaagactacggcacttac
aaagatggtgtggagaaaattgagcggttaatccttcggaatgcagacgtcgtatgctgc
acatgcattggagcgggcgactatagattgaaaactatgaagttcaaacatgtccttata
gacgaggcaacccaaggaactgagccggaagtgttgattccattggtccgaggggcgaag
caagttattttggttggggaccactgtcagttacgtccgttggttttctctaccgcagca
gagaaagctggataccaacgaagtttgtttgaacgactggtgttgatgggacaccgacca
gtgcggttggacgtgcaataccggatgaatccttctctctctttcttcccctctcatcat
tattatgaggggacccttcagaatggcgttaccgctgagcaacgcgatgcgtcggaagtc
ttcccctggccggacgtaacgaagcccatttttttctacaatgcaaccgggaatgaggaa
cttgggtcaaacggaagatcatatctgaatcgagcggaggctgcattgactgagcagatt
gtaacgaagcttatacaggggggagtggaacccggggatatcggtgtcataactccgtat
aggtcacaatgtcgatatttgagaagctatctttcacgtagtggtcgtcttcctatggaa
gtctatgatcgcgtcgaaatttcgtctgttgatgcgtttcagggaagagaaaaggaattc
ataattttgtcgtgcgttcggagcaatcaccgtcagggtgcggggtttgtgacggacggg
aggaggcttaatgtttcgctaacccgggcgaagcgtgggctaattataatgggcaatgtg
cagcttttctcacggtacccgggctggcacgaactccttgtgcatatgaattctttgtcg
ttgatcgtggaaggccctattgacgacctcgttccctcggcggtggtgctgcagaaacca
cggaaaagaggtggtaaattgaaaggggaagaatccgactcgccattgttcttgcctggt
gagtcttga
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