Trypanosoma brucei gambiense: TbgDal_V4900
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Entry
TbgDal_V4900 CDS
T06526
Name
(RefSeq) structural maintenance of chromosome 3, putative
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
tbg
Trypanosoma brucei gambiense
Brite
KEGG Orthology (KO) [BR:
tbg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tbg03036
]
TbgDal_V4900
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tbg00535
]
TbgDal_V4900
Chromosome and associated proteins [BR:
tbg03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
TbgDal_V4900
Meiosis-specific proteins
Cohesin complex and associated proteins
TbgDal_V4900
Proteoglycans [BR:
tbg00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
TbgDal_V4900
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_15
AAA_21
AAA_29
Motif
Other DBs
NCBI-GeneID:
23861503
NCBI-ProteinID:
XP_011773638
LinkDB
All DBs
Position
5:<1048357..>1051956
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AA seq
1199 aa
AA seq
DB search
MYIKNILISGFRSYREQAFEQELSPKNNVIVGKNGAGKSNFFAAIQFVLCEKFMNLSSVE
RKDLFHVGSGRPALPIFVEIIFDNSDGRLVIPGKSAVNEVRIRRTLGLKQDEFRVNDKRF
TATDIRQLLESAGFSSTNPYYIVEQGQISSLANMSDEERFQLIKDVAGTRVYEVRRKESE
KILEETEVQHEKIGESIAQLEERLEELRSESDELMSFQEIDKKRKCVQYCILNSDLNAAR
EELRRLDDERNSYMSRSGRDHYDIDEAKAIISEAESEIRNCDQRILRLEGELQDLDTKRG
TLMREKEIVQLNCMSSLNTMKRTESVKTNVLKRVGELNKQIAETNAGLKKKLAIIQREQL
TVDQKSEELSAIEGKLKALEARRARQLLFKNKQERDNWLAEESNRNRKTIENYKHELKFT
CSEIQKVEKQIEDEETEQKNWEESLKKSDSVITELKSKYEETMAFRNSLSVKKGDLWREQ
SALVQTVRTLRENHNKARSQLEKVIRSDVRQGLQSLKEVLDELADPSLTNAVHGQLIELI
GVSNGYETAVEVTAGNSLFNVVVDSFEVSAILLENMNSRKKPGRISFFPMDTCRGTVTRF
GEGVECNSLADHIICDPKFAGIVAELFGNTAVVTSIADGENVSKKYACDAVTLDGDQVSR
RGGITGGYIESRSLKLSAFKYEKVAAADFLRGDEALKRITQELDNVNQALTGVVTTLSSL
KTEMSSITKSKDGSQVVEQHAQRKAALDRQKDKLYASKKQLEDMINTAQVNIATYQHEGK
EAFKSAWSEGEQRELEALVKDVDDRRMELSKLQRRSAQLAAEVRALEDMRLNLNVQLTAT
KKFFHDSAQLSTSNTAITNEKENLDDDISFNSQQANEVYRLLDETRKEKLRREEEVEKLR
SGYLEALNSIQERRDFDGRTLMQQAHCIRRRDGAAEKIRQLGVIPKEAETYSGLSREKLI
QTLKECNKAAEKYAHINRKAVDQYNTLMETKNGLVAQKEDLQNELKSIRDLMDHLDCKKD
EAVERTYKQIQLHFEQVFKELVTTDDCYGKLQLIMSNTRKEAGEDPYVAVQIKVSFGLGA
AVTDLKQLSGGQKSLVALALIFAIQRCDPAPFYLFDEIDAALDTEYRASVAKLLSKESGS
CQFITATFKNEMLDVADHVLGVFFHNKISRIQAITVEEGNKLLKQAVVEERKRVREHVE
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atgtatatcaaaaatattcttatttccggattccgctcgtaccgagaacaagcgtttgag
caggagctctcgccgaaaaacaacgtgatcgttgggaaaaacggagcaggcaagtcgaat
ttcttcgctgcgatccagtttgttctttgtgagaaatttatgaacctttcttctgtagag
agaaaggatctgttccacgttggatccgggaggcctgcgttgcccatctttgtggaaatt
atttttgataattctgatggtcgtcttgtaataccgggaaaatctgctgtgaatgaagtg
cgtatacggcgtacactgggccttaagcaagacgaatttcgtgtaaatgacaaacggttc
acggccactgatatccggcaactgctggaaagcgctgggttctcgtcaaccaacccttac
tatattgttgagcaaggccaaatttcaagtttggcaaacatgagtgatgaagaacggttc
caacttataaaagatgtggcaggtacgagagtttatgaagtaaggcgaaaggagagcgag
aagattttggaagaaacggaggtgcagcacgagaaaatcggggagtctattgctcaactc
gaggagcgtcttgaagagcttcggtctgagtctgatgaactcatgtcgttccaagagatt
gacaaaaaaagaaagtgtgttcagtactgtatccttaactcagacctgaacgctgcaaga
gaagaacttcggaggctggatgatgagaggaactcttacatgtcccgcagcggaagggat
cattacgatattgatgaagcgaaagccatcatcagtgaagctgaatcggagatacgtaat
tgcgatcagcgtatcttgaggttggagggggagctacaggacctggatacgaaaaggggc
acattgatgcgtgaaaaagagattgtgcaattaaattgtatgtcatctctcaacacgatg
aaaagaacagagagtgtgaaaacgaacgttctgaagagggttggagaactgaacaaacag
atagcagagacgaatgctggcttgaagaagaagcttgctatcatacaacgggagcagctt
actgttgatcagaaaagtgaggaactgtccgccatagaaggaaaacttaaggcacttgaa
gcgagacgggctcgtcaattgcttttcaagaacaagcaagagcgggacaactggcttgct
gaagagtctaatagaaacagaaaaaccatagagaattataaacatgaattaaagtttacg
tgtagtgagatacagaaagttgaaaagcaaattgaggatgaggaaactgaacagaaaaat
tgggaggaatcattaaagaaatcagattcagttataacggagcttaaatcaaagtacgaa
gagacgatggccttcaggaattcactgagcgttaaaaagggtgacctctggagagaacag
tctgcccttgtacagacggttcggacactacgcgagaatcacaacaaagcccgcagtcaa
ctcgaaaaagtaattcgctcagatgttcgtcaagggttgcagtctcttaaagaggttctg
gacgagctggccgacccatcgctaacaaatgctgtacatggccaattaattgagctcatc
ggcgtctcgaacggctacgagacagctgttgaagtgacagctggtaattcactctttaac
gttgttgttgattcattcgaagttagtgcgattttgctggagaatatgaacagcaggaaa
aaacctggacgtatatcatttttcccaatggatacgtgtaggggcacggtgacacggttc
ggtgaaggtgtcgagtgtaacagcttggcagaccatataatttgtgatccgaagtttgct
ggcattgttgccgaactatttggaaatactgctgttgtgacctccattgcagatggtgaa
aatgtttcaaaaaagtacgcatgtgacgcggtaacgttggatggggatcaagtcagtcgg
agaggtggtataacaggtggttatatcgaatctcggagtttgaaactctctgctttcaag
tatgaaaaggttgctgctgcagattttttaagaggagatgaggccctgaagaggattact
caggagttggacaacgttaaccaggccttaacaggtgttgtgaccacccttagctcgctc
aagacggagatgtcctccataacgaaatctaaagacggctcacaagttgtcgaacaacat
gcacaaagaaaagcagcactggataggcagaaggataagttatacgcatcaaagaagcag
ttggaggacatgataaatactgcccaagtaaacatagccacctaccagcatgagggaaaa
gaagcgttcaaatcggcatggagcgaaggtgaacaacgagagttggaggcgctggtgaaa
gatgtcgacgaccgccgcatggaactctcaaaacttcagcggcggagtgcacagttggct
gcggaagtgagggccttggaggatatgcggcttaacttaaacgtccaactcacggctact
aaaaagttctttcacgattccgctcaactcagtacaagtaataccgctattactaatgaa
aaagaaaatcttgacgatgatatttcttttaactcgcagcaagccaacgaagtctacagg
ttattggatgagaccaggaaagagaaacttcgcagggaagaagaagtcgagaagcttagg
agtggctaccttgaggctctgaattctattcaggaaagaagagatttcgacggaaggact
ctaatgcagcaggcacattgcattagacgtcgtgatggcgcggcggagaagataaggcaa
ctgggcgtaatacccaaggaagctgagacatattctgggttgtccagagaaaaactaata
caaacactcaaagagtgcaataaagctgctgagaaatatgcacatataaaccgaaaggca
gttgatcagtacaatacattaatggaaacgaaaaacggtcttgtcgcccagaaagaggat
cttcagaatgaactgaagagtattcgtgacttaatggaccacctcgactgcaaaaaggat
gaagcagttgagcggacatacaagcaaattcagttgcactttgagcaagttttcaaagag
ttagttacgaccgatgactgttacggtaaacttcaactcatcatgtcaaacaccagaaaa
gaggcaggtgaggatccgtatgttgctgttcagataaaagtttctttcggactaggagct
gccgtcactgacctgaaacaactgagtggtggacaaaaatcacttgtggcgctggcgttg
atttttgctattcagcgctgtgatcctgcaccattttatcttttcgatgaaatcgatgct
gccctcgatactgagtatcgggcgtctgtagcgaagcttctttctaaagaatcagggtcg
tgccaatttattacagcaacattcaaaaacgaaatgcttgacgtggccgatcacgtgctc
ggtgttttctttcacaacaaaataagtcgtattcaagcaattacggttgaagaaggtaac
aagcttttgaaacaagcagttgttgaggaaagaaaaagagtccgtgagcatgttgaatga
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integrated database retrieval system
