Trypanosoma brucei gambiense: TbgDal_V5570
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Entry
TbgDal_V5570 CDS
T06526
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7p
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
tbg
Trypanosoma brucei gambiense
Pathway
tbg03018
RNA degradation
tbg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tbg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TbgDal_V5570
09123 Folding, sorting and degradation
03018 RNA degradation
TbgDal_V5570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbg03019
]
TbgDal_V5570
03041 Spliceosome [BR:
tbg03041
]
TbgDal_V5570
Messenger RNA biogenesis [BR:
tbg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
TbgDal_V5570
mRNA degradation factors
5'-3' decay
Lsm complex
TbgDal_V5570
Spliceosome [BR:
tbg03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
TbgDal_V5570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
BPL_C
Motif
Other DBs
NCBI-GeneID:
23861576
NCBI-ProteinID:
XP_011773704
UniProt:
C9ZPT9
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Position
5:complement(1189258..1189536)
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AA seq
92 aa
AA seq
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MSAQQAHILKKKESILSLEPHLDRRVVVSLEDREVHGVLKGFDNNINLVLANAEIWNKDV
RERQIGACVVRGGLLVSVSSGDTAILQQNPFQ
NT seq
279 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcacagcaggcacacatccttaagaaaaaggagagcatactgtcactagagccg
catctggatcgtcgtgttgttgtttcattggaggaccgcgaagtgcatggcgtgctgaag
ggattcgacaataacattaaccttgttctggcaaacgcggaaatatggaacaaagatgtg
cgcgagcgtcaaatcggtgcctgcgttgtccgtggaggtctcctcgttagtgtgtcatca
ggtgacacagcaatccttcaacagaacccattccagtaa
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