Trypanosoma brucei gambiense: TbgDal_VI2540
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Entry
TbgDal_VI2540 CDS
T06526
Name
(RefSeq) vacuolar assembly protein vps41, putative
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
tbg
Trypanosoma brucei gambiense
Pathway
tbg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tbg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
TbgDal_VI2540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tbg04131
]
TbgDal_VI2540
Membrane trafficking [BR:
tbg04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
TbgDal_VI2540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
WD40_WDHD1_1st
LysM
Beta-prop_HPS5
WD40_CDC20-Fz
zf-ANAPC11
zf-RING_Vps41
zf-C3HC4_2
Clathrin
Beta-prop_EML_2
WD40_Prp19
HCV_core
zf_RING_Vps8
zf-rbx1
LysM_RLK
WDR55
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
23861899
NCBI-ProteinID:
XP_011774061
UniProt:
C9ZQU6
LinkDB
All DBs
Position
6:600528..603806
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AA seq
1092 aa
AA seq
DB search
MSIARLEPSVNDETQRGNLAREEEDEEGQQEGSEREVPYSHVSDGTDNEDYTGDVTGGEE
SDYEEGSEVEQENLLSFSAFPLEAIGGQHVMVITAFRRFVAVGTSRGDVMLLEATSGVVF
RLLHAHTNPISDITCDTSEKYIGSSDMSGLVTIHNLTSGTESYRKDFGRSIKSLSIHPFY
GRRDERPAVVSSSDDVMLITKTMFLGRNVSVIHQKHGKVFCVKWCGADIIAWASETGVVL
YSYSGKEVLQSIPRPENSLHLELYNCSLIWEPPRTLTCGWGNWIQEVVLRVSGRESGSRN
QRVIVHPPVLTDTLRDPFRVCGMAAFGADRYAVLAATVEQEGCVGELGVRIVDRATFDPV
YCARIATSHKHTLQFCLAFTQASCESAFEAPKLTMNNTPQHDPALPTKGSMYFVGCGDVI
IRAAPADEDDHVQYLLGVGQVPEAYEYAQKYALTRYDLKGIGWRMLQHLLAVGKHEEAAF
HLPRIIQYDCTEWETWIVKFDQRGLSHLLADVVPTKLPGNGSQSGCARETGNPSERIGEE
YYELLLQRCLEKDVARFRKAVRRLSGLYKLEVICRAAEVRYNDWRLQVHRGSNVPEEEMR
DLGDAYGMLLKLNGQYNEALRVLSRVAHSNELFELVQERHLFSEALELLPELFATNEGKT
VELLLTPAPISSSTTTSSNAPATLTEDENDIDDHCLGPPLLFPPASVVQRLEFAHRGYLW
SYLKALKMHDKAAYKEILRVYVQLVATLFIENEPSGMLQFLRENYSMLPKLKEIYALCKK
EQMLDEMVFLLLRMGKEEEGLYVIVHEMKNMRKAVQFVADVPNKEDQTSLYKKLIHMVLE
ANAGFPSRNGQKYIEHEMKADETLSSIARRYGVDESDLRAANPVLDAEGGGGCSGNVSDL
GDVVPQRRTCIVPLDLTKELIEAVVDMSVAHLVTLDPSLIIELLPDEEPMPHVGNCLATV
ARSKANSVALMEAVVCVATSDLLTCFESFYKRELSCIRVTHDGAVCPLCRRPTSEGVVVF
RCLHAHHLRCVVNYFSGDNTLFDSLSNDEVERILKDPDGFINSTQWSGPISCCFCNQLTR
VAELVEVEMQSA
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgagtatagcgcggttggagccatctgtaaacgatgagacccaacggggaaatttagca
cgagaggaggaggatgaggaaggtcaacaggaaggatcggagcgggaagtcccttacagt
cacgtctccgacggcaccgataatgaggattatacgggggacgtgacaggtggtgaggag
agcgattacgaagagggatctgaagtggagcaagaaaaccttctgtcattctctgcattc
cccttggaggctattggtggtcaacacgtcatggttataacggcattccgccgctttgtt
gctgtaggcactagtcgtggagacgtgatgctgctggaagccacgagtggcgtagtgttt
cgattgcttcacgctcataccaaccctattagtgatatcacttgtgacaccagtgaaaag
tacattggttcttcagatatgtcagggttggtcaccatacacaatcttactagtggtacg
gagtcctacaggaaggattttggtcgctcgatcaagtcgttatctattcatcccttttat
ggtcgcagggacgaacggcctgctgttgtttctagttctgacgatgttatgctcatcacc
aaaactatgtttcttggccgaaatgtttcggttatacaccaaaagcacggaaaggtgttt
tgtgtgaagtggtgcggtgccgacattattgcatgggcaagtgagactggtgttgtatta
tacagttattcaggaaaggaggtactgcagtctattccacgacctgaaaattctttacat
cttgagttgtataattgctcgctcatctgggagcctccacgcacgcttacatgtggatgg
ggtaactggattcaggaggttgtgttgcgtgtaagcggtcgtgagtccggatcccgcaac
caaagggttattgttcatccccctgttctaacggatacgctgagggatccatttcgtgtt
tgcggtatggcggcttttggtgcagatcggtacgctgtactcgctgcgacagttgaacag
gaaggttgtgtgggagaattgggcgtgcgcatcgtggaccgcgcgacattcgatcccgtt
tactgcgcaagaatagctacaagccacaagcacactttgcagttttgtttggctttcaca
caagctagttgtgagagtgcctttgaggcaccaaaactcaccatgaacaacacccctcag
catgatcccgcactcccaacaaaagggtccatgtactttgttggatgcggcgacgttatc
attagggcagcacctgcggacgaagatgatcacgttcagtatcttctaggtgtgggtcaa
gttccggaggcttatgagtacgcacaaaaatatgctcttacaaggtacgatttgaagggt
attggttggcggatgcttcaacatcttttagcggttggaaaacatgaggaagctgctttt
catctcccccgcataattcagtatgattgtaccgagtgggaaacctggatagtgaagttt
gatcagcgggggttatctcacttgttagcagatgtggttcccaccaagttgcccgggaac
ggcagtcagagtggttgcgctagagagacaggcaatccttccgaaaggataggagaggaa
tattatgaacttcttcttcaacgttgtctagagaaagatgtggcgcgattcaggaaggcg
gtacggcgcctctccggtctttacaagttggaagttatctgccgcgcagcagaagtacga
tacaacgattggcgtttgcaagtgcatcgtggtagtaatgttcctgaagaagagatgcgg
gaccttggtgatgcttatggtatgcttttgaaacttaatggacaatacaacgaggcattg
cgggttctgtcgcgtgttgctcacagtaatgaactgtttgaacttgtccaggaaaggcat
ctctttagtgaggcattggaacttcttcctgagctgtttgccacaaacgaaggcaagact
gtggagcttttgctaacaccggccccaattagcagcagcaccaccacttcatccaacgcc
cctgcaactttgacagaggatgagaatgacatcgatgaccactgcttgggtcctcctttg
ctttttccccctgcgtctgtggttcagcgtctagagtttgcacaccgtggatatttgtgg
tcatacctgaaggcactgaaaatgcacgataaggctgcatacaaggaaatactgagggtg
tatgttcaacttgtagccacacttttcatcgaaaacgaaccttccggcatgttacagttc
ctccgtgagaattactccatgctgcccaagttaaaggagatatatgcactttgcaaaaaa
gagcaaatgcttgacgaaatggtttttctattgttgcgaatgggtaaggaagaggagggt
ctttacgttatcgtacacgaaatgaagaacatgagaaaagcggtacaatttgttgccgat
gtacctaacaaagaggaccaaactagtctctataagaagttaatacacatggtgttagag
gctaacgccggtttccccagccgtaacggtcaaaaatacattgaacatgaaatgaaagca
gatgaaacactgtcgagcatcgcaaggaggtatggtgttgacgaaagtgatctgcgcgcg
gcaaaccccgttctggacgcagagggaggagggggttgtagtggcaacgtatctgattta
ggtgatgtggttccccaacgccgtacttgcattgtgcctttggatttgacgaaggaactt
atcgaagctgttgtcgatatgtcggtcgcacatttggtaacactagacccctcactcatt
atcgaactacttcctgatgaggaaccaatgccccacgtaggaaattgtttagccactgtc
gcgcgtagcaaagccaacagtgtggccctcatggaagctgtcgtgtgtgtggccacgagt
gacttattaacttgcttcgagtcattttacaagcgcgagctatcctgtattcgtgtaact
cacgatggtgcagtgtgtcccctttgtcgacgcccaacgtcagagggtgttgttgttttt
aggtgcttacacgctcatcatttgcgatgtgtggtgaattacttctctggagataacaca
ctattcgattcattgagcaatgacgaagtcgaacgaatcctcaaagaccctgatggattc
atcaactcaacgcagtggtctggaccgataagttgttgtttttgtaaccagttgaccaga
gtggcagaattagttgaggttgaaatgcagagcgcatag
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