Trypanosoma brucei gambiense: TbgDal_VIII1070
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Entry
TbgDal_VIII1070 CDS
T06526
Name
(RefSeq) ATP-dependent DEAD/H RNA helicase, putative
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tbg
Trypanosoma brucei gambiense
Pathway
tbg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tbg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TbgDal_VIII1070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tbg03041
]
TbgDal_VIII1070
03009 Ribosome biogenesis [BR:
tbg03009
]
TbgDal_VIII1070
Enzymes [BR:
tbg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TbgDal_VIII1070
Spliceosome [BR:
tbg03041
]
Complex A
U1 snRNP components
U1 related factors
TbgDal_VIII1070
Complex B
TbgDal_VIII1070
Ribosome biogenesis [BR:
tbg03009
]
Eukaryotic type
Pre-60S particles
Helicases
TbgDal_VIII1070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
23863265
NCBI-ProteinID:
XP_011775435
UniProt:
C9ZUS0
LinkDB
All DBs
Position
8:350312..353322
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AA seq
569 aa
AA seq
DB search
MYGMNRGGGGGYRNDRMGALGANLQDVKWDQVNVVAPQWNYYKPQERCSDEEVAQYMRDN
HITIYGDSVPQPMLKFSDLVAPDTIHQAFIDLGYKSPTPIQSIAWPILLNSRDLVGVAKT
GSGKTMGFMVPAALHIMAQPPIRVGEGPIALVLAPTRELAVQIEEETRKVLRRVPTITTA
CLYGGTPKGPQIRALRAGVHVCIATPGRLIDLLEIRAANLLRVTFLVLDEADRMLDMGFE
VQIRKICQQIRKDRQTLMFSATWPQEIRNLAASFQRDFIRVHVGSEDLIANADVTQHVSV
VEDYDKQRRLEEILQKVGKQRVLIFVKTKRTADSLHHSLQRLIGGSVMAIHGDKEQSQRD
YVLDRFRRDERSVLVATDVAARGLDIKNLDVVINFDMPTNIEDYVHRIGRTGRAGQRGDA
YTFVSGADPSKTVRDLIDILRRANQEIPPGLHSLAGRGGGGSGGGGFRGGRRGGYGGGGG
GYGYGRSGAQYGSGPTYGRDYRGAPSHHQSGISVGGNTSDAYWRGGAPPPGQQPYYPVCG
GNKRTREVSGGFHSDPQNSYRQQPTGGSY
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgtatgggatgaacagaggaggaggcggtggataccgcaacgaccggatgggtgcactc
ggtgccaacctacaggatgtaaagtgggaccaggtgaatgttgtggctcctcagtggaac
tattacaagccccaggagcgttgcagtgacgaggaggtggcacaatacatgcgcgacaac
cacattactatttatggtgattccgtgccccagccaatgctcaagttctctgacctcgtt
gcgccggacaccattcatcaggcattcatagacctcggctacaagagcccgaccccaatt
cagtctatcgcctggccaatccttctcaactcacgcgaccttgtcggcgtggcgaagacc
ggatccggcaagaccatgggtttcatggtccctgccgcccttcatataatggcgcagccg
cccatccgcgtgggtgagggtcccattgctttggtgctcgcgccgacgagggaacttgcg
gtgcagatcgaagaggagacgcgtaaggtgctacgacgtgtgccgaccatcacgacggcg
tgtttatatggcggtacaccaaaggggccgcaaatccgtgcccttcgtgctggggtacat
gtctgcattgcaactcccggccgcctcatcgacctgctggagattcgcgctgccaatctt
ctgcgcgtgacgttccttgtgcttgacgaagcggaccgtatgcttgatatggggttcgag
gtgcaaattcgaaagatttgccagcagattcgcaaggatcggcagacgcttatgttctcg
gcaacgtggccccaagaaattaggaacctcgcggctagttttcaacgtgacttcattcgt
gttcatgttggatctgaggacctaattgcgaacgctgatgttactcagcacgtgagtgtg
gtggaagattacgacaaacagcggcggctggaggagattctgcaaaaggtgggcaagcag
agggttctcatctttgtaaagacgaagcgtaccgctgattccctgcaccattcgctacag
cgcctcattggaggctcagtgatggccatccatggtgataaggaacaatcgcagcgcgat
tatgtgcttgaccgcttccgtcgcgacgaaaggtccgtgctggtagcaacggacgttgcc
gcccgcgggcttgacattaagaacctcgatgtggtgattaacttcgacatgcccacaaac
atagaagattacgtgcatcgtattgggcgtaccggtcgtgccgggcagcgtggtgatgct
tacacatttgttagcggtgccgatccgtccaagactgttcgtgacttgatcgacattctt
cgccgcgccaatcaggagattccaccagggcttcactcgcttgctggccgcggtggcggt
ggcagtggcggtggcggcttccgtgggggccgtcgcggagggtacggtgggggcggtggc
ggttacggctacggccgctctggtgcgcagtacggctctgggcccacatacggcagggat
taccgtggcgctccatcccaccatcaatcgggtatttctgttggtggcaatacatctgat
gcctattggagagggggagcgccaccgcctggtcaacagccgtactatccggtgtgcgga
ggtaataaacggacccgtgaggtgtccggcggctttcactcagatcctcagaactcgtac
cgtcagcaaccgacgggtggttcttattag
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