Trypanosoma brucei gambiense: TbgDal_X10190
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Entry
TbgDal_X10190 CDS
T06526
Name
(RefSeq) ribonuclease, putative
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tbg
Trypanosoma brucei gambiense
Pathway
tbg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TbgDal_X10190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbg03019
]
TbgDal_X10190
Enzymes [BR:
tbg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
TbgDal_X10190
Messenger RNA biogenesis [BR:
tbg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
TbgDal_X10190
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
23864186
NCBI-ProteinID:
XP_011778190
UniProt:
D0A3T2
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Position
10:2000770..2002299
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AA seq
509 aa
AA seq
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MDVDKYNCSVVFDDFKISIEQCDFYALDQEMTGVDNGERPQSGTMSLTELYQVSRDVVNR
YIAFQLGVTVFKRVDGGYEVKPYNFYLLKSVGDFVVNIESLKFLADNHMDFQRWLVTGMP
YCGKVDTGLRGDEGGSVSSLRRGLSEYLVSRIKKWYNSPLARDGECITFKTVICEEIERL
TLSKLKEEQVFVSFEYDKSRCIGSPVSLTVHRGTSHFASGQGKEMATPDLEPIKVCGFQH
FWKCLTDCKKPIVGHNFWLDIMFMVQMHEGPLPEDYDTYKRLVHQLFPCVYDTKTLGREV
IINNLSESFCLKDLYDRCLASRLKLGRAPEFFFPPGFGRYDPDSLESECKAHEAGYDSYM
TGVAFSICRDLYCSGENSTLDKWRNIVSVYGSNYYMNVNGKDSLRRSATFVVEFREEIEY
PFGELLLCRDDAFTNMDRDVELLPRDCIISYDNKGLCRTIIVVFEDDISEDEVQTRIANS
ARRWSEVTKEANAYNIVFPEILSVYRLSG
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggacgtcgacaaatataactgttccgttgtttttgatgattttaagatttccatcgag
caatgtgatttttatgcgcttgatcaggagatgaccggtgtcgataacggtgagcgaccg
cagtcaggaacaatgagtttgacagagctttaccaagtttcgcgggacgttgtcaaccgg
tacattgccttccagctaggtgtaacagttttcaagcgtgttgatggcggatatgaggtt
aaaccatacaacttttatttattgaaaagtgtgggcgattttgttgtgaatattgagtca
ctgaagttcttggcagacaaccacatggattttcagcggtggttggtgacaggcatgccg
tattgtggtaaagtggacacagggttgcgtggtgatgaagggggttctgtgtctagttta
aggagagggttatccgaataccttgttagtcgaataaaaaagtggtataacagcccgttg
gcacgggatggcgagtgtattactttcaaaactgtaatatgcgaagaaatagagcggttg
actttatcaaaacttaaagaagaacaagttttcgtttcatttgagtatgataagtcgaga
tgcattggatcaccggtgtcgttgacagttcaccgtggaacgagtcatttcgccagcggc
caaggtaaggaaatggccacacctgatttagagccgatcaaagtatgtgggtttcaacat
ttttggaagtgcttaaccgattgcaagaaacctattgttggccacaatttttggcttgac
attatgtttatggttcaaatgcacgaagggcctctccccgaagattatgatacttacaag
agactcgttcaccaactgttcccgtgcgtatacgatacgaaaacactcggccgcgaggtg
ataattaacaacttatctgagtctttttgtctgaaagatttgtacgacagatgcctggcc
tcgaggctaaaattgggaagggcaccagagttctttttcccaccaggatttggtcggtac
gacccagacagccttgaaagtgaatgcaaagcccatgaagctgggtacgattcatacatg
acgggcgtggctttttccatttgtagggatttgtactgtagcggtgaaaattctaccttg
gataagtggcgaaacattgtttctgtgtacggcagcaattactatatgaatgtcaatggc
aaggatagtttgaggaggtctgcaacgtttgtggtggagtttagggaggagattgagtat
ccttttggagagttgcttctgtgtcgggacgatgcattcacaaatatggatagggacgtg
gagttattaccgagggactgtattatatcatatgacaacaaaggattatgcaggacgata
atagttgtgttcgaagatgatattagcgaagatgaggtacaaacgcgcattgcgaattcg
gcgcgccgttggagtgaggttactaaggaggcaaatgcttataatatagtatttcccgaa
atactaagtgtttaccgtcttagtgggtag
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