Trypanosoma brucei gambiense: TbgDal_X500
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Entry
TbgDal_X500 CDS
T06526
Name
(RefSeq) ATP-dependent DEAD/H RNA helicase, putative
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tbg
Trypanosoma brucei gambiense
Pathway
tbg03013
Nucleocytoplasmic transport
tbg03015
mRNA surveillance pathway
tbg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tbg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TbgDal_X500
09122 Translation
03013 Nucleocytoplasmic transport
TbgDal_X500
03015 mRNA surveillance pathway
TbgDal_X500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbg03019
]
TbgDal_X500
03041 Spliceosome [BR:
tbg03041
]
TbgDal_X500
Enzymes [BR:
tbg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TbgDal_X500
Messenger RNA biogenesis [BR:
tbg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
TbgDal_X500
Spliceosome [BR:
tbg03041
]
Complex C
Other components
EJC/TREX
TbgDal_X500
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
TbgDal_X500
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
CMS1
PEP_mutase
Motif
Other DBs
NCBI-GeneID:
23865583
NCBI-ProteinID:
XP_011777235
UniProt:
D0A127
LinkDB
All DBs
Position
10:<82594..>83904
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AA seq
436 aa
AA seq
DB search
MSSGLADFDGDDVRAPVVAAQPHIGVGLGTHSAVALGGFQDFCLKSELANAIRENGFEHP
SEVQHQALPQAMLGADILAQAKSGMGKTAVFVFALLEQVEKPTDGQRPFCQAIVIAHARE
LAYQIEQEFKRFNKYLPHCTTGVFFGGVPEDENIKQLKKEVPAIVVATPGRICSLIERKA
LDVSRVKWFVVDEFDRCLEDVKMRRDVQTAFLKTPKEKQVMMFSATMTEELRNVAKKFMS
NPTEIYVDQRSKLTLHGLAQYYINVTEAQKLRKLCDILDAVEFNQVIIFTSTVERCEALS
RQLQALKFPSKAIHSRMEQAERLVVYESCKTNQARIIVATDIFGRGVDIDRINLVVQFDM
ASDADSYLHRVGRAGRFGTKGLTVAFLTEEEKEIKRENRKYTDQGIMKEVQERFEMQVQE
LTDIATQLNQSQYMNQ
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtggtctcgctgactttgacggagatgatgtgcgggcgccagttgtggctgcg
caaccgcatattggtgttggtctcggaacccacagtgccgttgctctcggcggtttccaa
gatttttgtctcaaaagtgaactcgccaacgccattcgagaaaacggcttcgaacatccc
agtgaagtgcagcatcaggcccttccacaagccatgctcggtgcagatatccttgcacag
gcaaagtctggtatgggtaaaacagccgtgtttgtgtttgctttattggagcaagtggaa
aaaccaacggatgggcagcgacccttctgtcaagccatcgtcattgcccatgcacgcgag
ttggcatatcaaattgagcaggagttcaagcgtttcaacaaatacttgccgcattgtacc
actggtgtcttctttgggggcgtccctgaagacgagaacataaaacaactcaagaaggag
gttcccgcaatagtggtggccacaccaggtcgaatttgttccctcattgagcgaaaagct
ctcgacgtgtcgcgtgttaagtggtttgttgttgatgaattcgatcgctgcctagaggat
gtgaaaatgcgtcgcgatgtgcagacggcattccttaagacaccgaaggaaaaacaggtg
atgatgttctcagccaccatgacggaggaactgcggaatgtggcgaagaaatttatgtcg
aaccccactgaaatctacgttgaccagcgttccaagcttacacttcacgggttggcgcaa
tattacatcaatgtgacggaggcacagaaacttcgtaagttgtgcgacatcctcgacgct
gttgagttcaatcaagtcattatattcacttccactgttgagcgctgtgaggctctcagc
cgtcagctgcaggctcttaagtttccctccaaggcgattcactctcgcatggagcaggcg
gagcggttggttgtgtatgagagctgcaaaacaaaccaagctcgtatcatcgtcgccaca
gacatctttggccgtggtgtggatattgaccgtattaatcttgttgtacagtttgatatg
gcgtctgatgctgactcgtaccttcatcgtgttggtcgtgctggtcgctttggtacgaag
ggacttacggtggcattcctcactgaagaggaaaaggaaattaagcgtgagaaccgtaaa
tatactgaccagggtatcatgaaggaagtgcaggagcgatttgagatgcaggtccaggaa
cttactgacatcgccacacaactgaaccagagccagtatatgaaccaatag
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