Trypanosoma brucei gambiense: TbgDal_X9120
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Entry
TbgDal_X9120 CDS
T06526
Name
(RefSeq) ATP-dependent DEAD/H RNA helicase, putative
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tbg
Trypanosoma brucei gambiense
Pathway
tbg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TbgDal_X9120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbg03019
]
TbgDal_X9120
03041 Spliceosome [BR:
tbg03041
]
TbgDal_X9120
03009 Ribosome biogenesis [BR:
tbg03009
]
TbgDal_X9120
03016 Transfer RNA biogenesis [BR:
tbg03016
]
TbgDal_X9120
Enzymes [BR:
tbg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TbgDal_X9120
Messenger RNA biogenesis [BR:
tbg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
TbgDal_X9120
Spliceosome [BR:
tbg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
TbgDal_X9120
Complex C
U4/U6.U5 tri-SnRNP related factors
TbgDal_X9120
Ribosome biogenesis [BR:
tbg03009
]
Eukaryotic type
Pre-60S particles
Helicases
TbgDal_X9120
Transfer RNA biogenesis [BR:
tbg03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
TbgDal_X9120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
ATPase_2
nSTAND3
AAA_22
PhoH
nSTAND_NTPase5
AAA_16
Motif
Other DBs
NCBI-GeneID:
23866035
NCBI-ProteinID:
XP_011778085
UniProt:
D0A3H7
LinkDB
All DBs
Position
10:complement(1812549..1815401)
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AA seq
950 aa
AA seq
DB search
MQDDIPVDGEPCVKRCRHETVPAMTFPYELDAFQRDSINALENGDSVLVSAHTSAGKTTV
ALYAIAKAVREKKRVIYTSPIKALSNQKFREFTDKFDSVGLMTGDTTIKVDSDCLVMTTE
ILRSMLYRGTEMLREVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAR
EFAEWVESIHPGTKVHVIHTDYRPVPLHHYVYPCGADGIFLIVDELGKFREDNFRRAMAS
VGAGNKGGDANGAESTEVAAASRGKQRSMRKSTEPIMEIIKLVMNRNMYPIIVFSFAKAE
CERNALALSKLNFNNTEEDALVTEVFNNAMECLATEDRKLPAIEHLLPLLKRGVGIHHSG
LLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGETNRYLTGGEYI
QMSGRAGRRGLDRVGVVIAMVDEAVEPEILKQVTGGGADVLNSSFHLTYNMVLNLLRVED
VDPEFMMRRSFAQFQRLRNRPALEMKAEELTKDITSICVEHEEMFRQYAHCQEQLEKKRK
QIGDFLKQPVFIRRFTNTGRLLRIRRSTDGALFNWGICRSSRAKTSNADEKDPSSFSVDA
LVICRKADPSQPTQLVPCHVKDHTINTVDLYTVTFDFTDIEAVSRFRVNLPADLDSASSR
AEVIQSLEKLYKNHGDDVPLLTSEELGVKDPKFKKLCEQLGNIEKQVQKCELVCNPTEAL
EADYESFKKRASLERELDAIKQELDQVTQAIFSDELKKMMRVLRRLDYIDKDNIILRKAR
VACEITTSDENELLLTELLFKGVLNSMETEMIVALMSCLVNVHRTPDGFSLPEEFRQPLN
DLNEIVNRIATLSIESGITQENTSVEKTMPSLMEVTYLWAKGAKFSDIVTKTNAYEGDIV
RMMRRLEEQLRQMAGAARSPAIGCMELHDKFLKGIQLIKRDIVFASSLYL
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgcaggatgacatacccgtggatggtgagccgtgtgtgaagcgatgccggcacgagacc
gttcccgccatgacgtttccgtacgagttggacgcgttccagagggatagcataaatgca
cttgagaacggcgacagtgttcttgtgtctgcccatacctccgctggaaagacgacagtg
gcgctttacgccatcgccaaagcagtgcgggagaaaaagcgagttatttacacttcacct
atcaaggcgctcagcaatcagaagttcagagaattcacagacaagtttgactccgtcggg
cttatgacgggcgatacaaccataaaagtagattcggactgcttagtcatgaccacagag
attctgcgcagtatgctgtaccgcggaactgagatgcttcgtgaggttgggtgtgttgta
ttcgacgaggtacactacatgagggacaagtcacgcggggtggtgtgggaggagactata
agtttgttgcccgagggctgccagtacgttttcctttcggcaactattccaaatgccagg
gagtttgcggaatgggtcgagagtattcaccccggcaccaaggttcatgtaattcacact
gattatcggcccgtcccgctgcatcactacgtgtatccatgtggtgccgatggtatattt
ctaattgtcgacgagctcggaaaatttcgtgaagacaatttcaggcgtgctatggcatca
gttggtgctggtaataaaggtggtgatgccaatggtgcggagtcaacagaggttgcggcc
gcttcgcgtgggaagcaaaggtcaatgcggaagtcaacagagcccattatggagattatc
aagctcgtgatgaaccgcaacatgtaccctattattgttttttcatttgcgaaagctgaa
tgtgagcgtaacgcgctagccctttccaagctaaattttaataatacggaagaggatgcg
cttgttacggaggtgttcaacaatgcgatggagtgccttgcgactgaggacaggaaactc
ccagcgattgaacacctactgccgctgctgaaacgtggtgttgggattcatcactcaggt
ttgttgccgattttgaaggaggtcgtggaaatactttttcaggcgggccttgtaaaggtg
ctgttctccactgaaactttttcgatggggctaaacatgcccgcccgcacagttgtcttc
acttccgttaaaaagtttgatggggagacaaaccggtacctcacaggtggtgaatacatc
caaatgtccggtcgtgcggggcgccgcggtttggatcgtgtgggcgttgttatagcgatg
gttgacgaagcagtggaaccggagattctgaagcaggtcaccggtggaggtgctgacgtg
ctaaatagcagttttcacctcacgtacaatatggtgctcaacttgcttcgcgtggaggat
gtagacccagagtttatgatgcggcgcagtttcgctcagtttcagcgactacgtaaccgg
ccggcgctggagatgaaggcagaagagttgacgaaggatatcacttcgatttgtgtggag
cacgaggaaatgttccgtcaatacgcccactgccaggagcaactcgaaaagaagcgtaag
caaattggcgactttctgaaacagcctgtttttatcagaagattcaccaatactggccga
ctcctccgtattcgacgttcgacagacggagccttgtttaactggggtatctgccgttca
tctcgagcaaaaacttctaatgctgacgagaaggacccgtcctctttttctgtggatgct
ttggttatttgccgcaaggctgatccatcgcaaccgactcagctggtgccatgccacgtc
aaggaccacactatcaatacggtggatttgtacaccgtaacgtttgattttaccgacatc
gaggctgtctcccgcttccgggtaaatctcccagccgaccttgactcggcatcaagccgt
gcagaggtgatacaaagtttggagaaattatacaaaaaccatggggatgatgtcccgcta
ctcacaagcgaggagttgggagtgaaggacccgaagtttaaaaagttatgtgagcagttg
ggaaacatagagaagcaggtacaaaaatgtgaacttgtgtgcaacccaacagaagcgtta
gaagccgattacgagtctttcaaaaagcgtgctagtcttgagagggaactggacgccatc
aaacaggagcttgaccaggtaacacaggctatattctctgatgagcttaagaagatgatg
cgtgtgctgcggcggttggattatatcgacaaggataacattattttgcgcaaagcacgc
gtggcatgtgagatcacgacgtcggatgagaacgagctacttctcacggagttgctcttc
aaaggtgtactaaactctatggagactgaaatgattgttgcactgatgtcttgtttggtg
aatgtccaccgaactcccgatggtttctcgctacctgaagagttcagacaacctttaaat
gaccttaacgagatcgtcaaccgcatagcgacactgagcattgaaagcggtattacacag
gaaaatacaagtgttgaaaagacgatgccttcgctcatggaagttacttatttgtgggca
aaaggagcaaagttttcggacattgtgaccaaaactaatgcctacgaaggggatatcgtt
cgtatgatgcgtcgccttgaggagcagttgcgtcagatggcaggtgcagcgcggtctcca
gccattgggtgtatggagctgcacgacaaattcctgaagggtattcagctcatcaagagg
gatattgtcttcgcgtcgtcgctgtacctgtag
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