Trypanosoma brucei gambiense: TbgDal_XI100
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Entry
TbgDal_XI100 CDS
T06526
Name
(RefSeq) hypothetical protein, conserved
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
tbg
Trypanosoma brucei gambiense
Pathway
tbg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tbg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TbgDal_XI100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbg03019
]
TbgDal_XI100
Messenger RNA biogenesis [BR:
tbg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
TbgDal_XI100
U7-dependent histone pre-mRNA processing factors
TbgDal_XI100
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF100_C
Lactamase_B_6
Beta-Casp
U_exon
Motif
Other DBs
NCBI-GeneID:
23866132
NCBI-ProteinID:
XP_011779159
UniProt:
D0A5E4
LinkDB
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Position
11:complement(<20801..>23257)
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AA seq
818 aa
AA seq
DB search
MLRASAGSIKLTNIYGAPSGDAYHPSIPMAYLLEIDGVRILMDCGWNDGFETSYLDALLP
YLGDLHAVLFSTPELSSCGALPFVMEHITAETHVAAAGATAKMGLHGLLHPFLYLFPNNN
TWKLQSGVEFEMTVDKIYSAFRSVREPYGGKVTIRHRDVEVECFPVFSGRMLGGCGWLIK
YQIDELFYCPDFSLKPSYALNRFAPPTTATLLFIDGSPFHLLGNSGKKYEEQLNVFIREV
LSTLRNGKDVLVPVSVPGRGLEVLTIIMHLLTEKGGDNYSIVLASVQAAEVIGKASTMTE
SLKDEVILSEHQLFANVITCKTAQEVMSVAGPKVCLADGETLDYGVAADLLEYFLQSSDE
DREHLIVFPWTPKRDTTAFSVAAAAKGDAIKVQYTRRIPLSKEELEEYYLRLELELEEQR
RALDGGAYEVAPLEDIASDSGDDGDEKQNGDAAQGSGGGAQKVQQCTPGLVLPGYMSFVS
KHLQFPILETVGSLSSAILKKMDCSYGLPIGDEMQALMRRKAPARIYSDEGPDNVQLHND
AQVEANIPSKTMVVDAVHIKNVRVFITDLSGFADAGTIRSLLKSRFTFAKKIVMIRGTTD
DHHSMTQFCRSEKVMKCGENVFVPRPLGTHLELATHVYSYVVQLDPQLANALPSALRRVK
ETRSNGFWDVGWVDGSLVRAVVYKEKDEEKEEDDHEELHPSQRRRTEGGTSTEMRDSVYT
LTALSSDKAQQCAREREMRGLQRGLYYLGETDLHKLRDAARNEQGIRGEFHKSAPMLIFD
NGVCLRKSVSGNVSLSSMVSPSVFGLRKTVYKHFSQVL
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgcgcttcggctggttcgatcaaactaacaaatatatatggggccccatctggc
gatgcgtatcacccgagcataccaatggcatacctgctggagatagatggtgtgcgaatt
cttatggactgtgggtggaatgatggattcgaaaccagttaccttgatgcccttttacct
taccttggcgatctccatgcagttcttttttccacaccagaactcagcagttgcggcgca
cttccttttgtgatggagcatataacagcggaaacacacgttgctgccgctggggctaca
gcgaaaatgggacttcatggcttgctgcatccctttctttacctttttcctaacaacaat
acatggaaacttcagtctggagtggagttcgaaatgacagtggacaaaatatatagtgca
tttcgtagtgtacgggagccatatggtggtaaggtaaccatccgtcatcgagatgttgaa
gtggagtgttttcccgttttttccggacggatgcttggaggttgcggatggctcataaaa
tatcaaattgatgagttgttttattgccctgatttttccttgaagccctcgtacgcactt
aatcggttcgcgccgccaacgacggcaacacttttgtttatagacggctcaccgtttcat
ttactcggtaattctggaaaaaaatacgaggagcagcttaatgtgttcatccgggaggtg
ctaagcacgcttcgtaatgggaaggatgtactggttcctgtctctgtacctggaagaggg
ttggaagtgctaacaataatcatgcatctccttaccgagaagggaggagataactattca
attgttctcgcttccgttcaagcggccgaggtgattgggaaagcaagcacgatgacggag
tctttaaaagatgaagtgattttaagtgagcatcaactctttgcaaatgtgattacgtgc
aaaacggcacaggaggtaatgagtgtagcgggaccaaaggtgtgtcttgccgatggggaa
acgttggactatggtgtagcggctgatctcctggagtattttctacagagtagtgatgag
gatcgggagcatcttattgtatttccgtggacacccaagcgggatacaactgcgttttcc
gtagccgcagcagcgaagggagatgccattaaggtgcagtacaccagaaggatcccacta
agtaaagaggaacttgaggagtattatctaagacttgaattggagttggaagagcagcgg
agggctttggatggaggagcgtatgaagtggctccacttgaggatatcgccagcgatagc
ggtgatgacggcgatgagaagcaaaatggagatgctgcacaaggaagtggaggaggggcg
cagaaggtacaacagtgtacgccgggacttgtgcttcctggttacatgagtttcgtatct
aaacatcttcagtttcctattctcgaaacagttggttcgcttagcagtgctattttgaag
aagatggactgctcctatggtttacccataggtgacgaaatgcaggccctcatgcgccga
aaagcacccgcgcgtatttacagtgatgaaggtcctgataacgtgcagttacacaacgac
gcacaagttgaggcgaacattccatcgaaaacaatggtcgtcgacgcagttcacataaaa
aatgttcgtgttttcattaccgatctctcaggttttgcagatgctgggacgatacgcagt
ttgctaaagtctcgttttacctttgcaaagaaaatagtgatgatacgcggcactactgat
gatcatcattccatgacccagttttgtcggtccgagaaggtaatgaagtgtggagaaaac
gttttcgtcccacgtccgttggggactcatttggagctggcgacacatgtttactcgtat
gttgtccagttggatccgcagcttgccaacgcacttccgtcggcgctgcgtcgtgttaag
gagacacggtcgaatgggttttgggatgttggttgggtggacggttcactcgtgcgtgca
gttgtgtataaagagaaggatgaggagaaggaggaagatgatcatgaagaactgcacccc
tcacagcgccgtcggacggagggcggtacatcgaccgaaatgcgtgacagcgtttatacg
cttacggcgctttcaagtgacaaggctcagcaatgcgcccgtgagcgtgagatgagggga
ttgcagcggggtttgtactatcttggcgaaaccgacctccataagttgcgtgatgctgct
cgtaatgaacaagggattaggggtgagtttcacaagagtgctcccatgctcatttttgac
aacggcgtttgtcttcgcaagagtgtgagcggaaatgtatcgttgtcttcaatggtgtca
ccttccgtcttcggactcaggaaaacagtttacaagcacttttctcaagttctgtga
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