Trypanosoma brucei gambiense: TbgDal_XI14240
Help
Entry
TbgDal_XI14240 CDS
T06526
Name
(RefSeq) CPSF 30 kDa subunit
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
tbg
Trypanosoma brucei gambiense
Pathway
tbg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tbg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TbgDal_XI14240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tbg03021
]
TbgDal_XI14240
03019 Messenger RNA biogenesis [BR:
tbg03019
]
TbgDal_XI14240
Transcription machinery [BR:
tbg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
TbgDal_XI14240
Messenger RNA biogenesis [BR:
tbg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
TbgDal_XI14240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
zf-CCCH_4
zf-CCHC
zf-CCCH_3
zf-C3H1
zf-CCHC_2
zf-CCCH_9
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
23866603
NCBI-ProteinID:
XP_011780569
UniProt:
D0A9F4
LinkDB
All DBs
Position
11:complement(3373991..3374824)
Genome browser
AA seq
277 aa
AA seq
DB search
MFTDNAAHTSLAFEDTLPVEAPATAKRSEICQPFQHGKCRNGAACPERHVLSQFKSMRLE
VCKHWLRGACVNGENCVYLHEYDDRYVPACAFYQRLGECSNPECPFQHVVQVERQPECAA
YRRGFCPLGPKCRLRHVFRPPCVFYLTGFCPLGPKCASGHPVQQLYNRNDVSERLRQRML
IERADDPSFNKNATCYRCFDPGHLSPNCPGMQSGLLRRLLMALQEPGEQLYFQSDGRAAR
KCCFFCGEEGHEVRDCPKKQKPQQWGGHRRGDATGRQ
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgtttactgacaacgctgcccacacgtcacttgccttcgaggatacccttccagtcgag
gcccccgctacggcgaagcggtctgaaatttgtcagccgttccaacatggcaagtgtcga
aacggtgcggcgtgccctgagcggcatgttctctcccaatttaagtccatgcgtttggag
gtctgcaagcattggcttcgcggcgcctgcgtgaacggtgaaaattgtgtatatttgcat
gaatacgacgatcgttatgtccctgcttgtgccttttatcagcgtctcggtgaatgttcc
aatccggagtgtccattccagcacgtcgtgcaggtggagcggcagccggaatgcgccgct
taccgccgaggtttttgtccattaggtcccaagtgccggctgcggcacgtcttccgccca
ccgtgtgtcttttacctcacaggattttgtccgttggggccgaagtgtgcttcgggccac
cccgtacagcagctttacaaccgtaatgacgttagtgagcggctgcggcagcggatgctg
atcgagcgggcagacgatccatctttcaacaaaaatgccacatgttaccgttgctttgat
ccggggcatctgtcacctaactgtccgggtatgcaaagtggtttgctccggcggttgctg
atggctctccaggaacctggagaacagttgtacttccagagcgatggacgtgccgcgcgg
aagtgctgctttttctgtggagaagaggggcatgaggtccgtgactgccccaagaagcag
aaaccccaacaatggggaggccaccgtcgtggtgatgcaacgggaaggcagtaa
DBGET
integrated database retrieval system