KEGG   Trypanosoma brucei gambiense: TbgDal_XI14240
Entry
TbgDal_XI14240    CDS       T06526                                 
Name
(RefSeq) CPSF 30 kDa subunit
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
tbg  Trypanosoma brucei gambiense
Pathway
tbg03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tbg00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    TbgDal_XI14240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tbg03021]
    TbgDal_XI14240
   03019 Messenger RNA biogenesis [BR:tbg03019]
    TbgDal_XI14240
Transcription machinery [BR:tbg03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     TbgDal_XI14240
Messenger RNA biogenesis [BR:tbg03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     TbgDal_XI14240
SSDB
Motif
Pfam: zf_CCCH_4 zf-CCCH Torus zf-CCCH_2 zf-CCCH_4 zf-CCHC zf-CCCH_3 zf-C3H1 zf-CCHC_2 zf-CCCH_9 zf-CCHC_3
Other DBs
NCBI-GeneID: 23866603
NCBI-ProteinID: XP_011780569
UniProt: D0A9F4
LinkDB
Position
11:complement(3373991..3374824)
AA seq 277 aa
MFTDNAAHTSLAFEDTLPVEAPATAKRSEICQPFQHGKCRNGAACPERHVLSQFKSMRLE
VCKHWLRGACVNGENCVYLHEYDDRYVPACAFYQRLGECSNPECPFQHVVQVERQPECAA
YRRGFCPLGPKCRLRHVFRPPCVFYLTGFCPLGPKCASGHPVQQLYNRNDVSERLRQRML
IERADDPSFNKNATCYRCFDPGHLSPNCPGMQSGLLRRLLMALQEPGEQLYFQSDGRAAR
KCCFFCGEEGHEVRDCPKKQKPQQWGGHRRGDATGRQ
NT seq 834 nt   +upstreamnt  +downstreamnt
atgtttactgacaacgctgcccacacgtcacttgccttcgaggatacccttccagtcgag
gcccccgctacggcgaagcggtctgaaatttgtcagccgttccaacatggcaagtgtcga
aacggtgcggcgtgccctgagcggcatgttctctcccaatttaagtccatgcgtttggag
gtctgcaagcattggcttcgcggcgcctgcgtgaacggtgaaaattgtgtatatttgcat
gaatacgacgatcgttatgtccctgcttgtgccttttatcagcgtctcggtgaatgttcc
aatccggagtgtccattccagcacgtcgtgcaggtggagcggcagccggaatgcgccgct
taccgccgaggtttttgtccattaggtcccaagtgccggctgcggcacgtcttccgccca
ccgtgtgtcttttacctcacaggattttgtccgttggggccgaagtgtgcttcgggccac
cccgtacagcagctttacaaccgtaatgacgttagtgagcggctgcggcagcggatgctg
atcgagcgggcagacgatccatctttcaacaaaaatgccacatgttaccgttgctttgat
ccggggcatctgtcacctaactgtccgggtatgcaaagtggtttgctccggcggttgctg
atggctctccaggaacctggagaacagttgtacttccagagcgatggacgtgccgcgcgg
aagtgctgctttttctgtggagaagaggggcatgaggtccgtgactgccccaagaagcag
aaaccccaacaatggggaggccaccgtcgtggtgatgcaacgggaaggcagtaa

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