Trypanosoma brucei gambiense: TbgDal_XI15590
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Entry
TbgDal_XI15590 CDS
T06526
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4p
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
tbg
Trypanosoma brucei gambiense
Pathway
tbg03018
RNA degradation
tbg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tbg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TbgDal_XI15590
09123 Folding, sorting and degradation
03018 RNA degradation
TbgDal_XI15590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbg03019
]
TbgDal_XI15590
03041 Spliceosome [BR:
tbg03041
]
TbgDal_XI15590
Messenger RNA biogenesis [BR:
tbg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
TbgDal_XI15590
mRNA degradation factors
5'-3' decay
Lsm complex
TbgDal_XI15590
Spliceosome [BR:
tbg03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
TbgDal_XI15590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
HrpE
Motif
Other DBs
NCBI-GeneID:
23866752
NCBI-ProteinID:
XP_011780704
UniProt:
D0A9T9
LinkDB
All DBs
Position
11:3660877..3661260
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AA seq
127 aa
AA seq
DB search
MSVRKSITPLDVLRNCRAKVVSVELAGGETINGTVVRVDRAMNMVLKQCIRTSADGEAFW
RSRESLIRGASVRNVRMDERAVIIADAQLREVTSKSKNKNRAKAKSNDKQQGERKATLSG
EKRNRGK
NT seq
384 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttaggaagtctataacgccgttggatgttcttcgcaactgtcgtgccaaagta
gtttctgttgagctggcgggcggtgaaaccatcaatggcacggttgtgcgcgtggaccgg
gcgatgaatatggttttgaagcagtgcattcggacatcagctgatggtgaagcgttttgg
cgctcacgtgagtccctcatccgcggtgcgagtgttagaaacgttcgtatggatgaacgg
gctgtgataattgcggatgctcagcttcgtgaagtcacaagcaagagcaagaacaagaac
agggccaaggctaagagcaacgataagcagcagggggaaaggaaagctacgttgagcggt
gaaaagcgtaaccgcgggaagtaa
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