Trypanosoma brucei gambiense: TbgDal_XI6470
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Entry
TbgDal_XI6470 CDS
T06526
Name
(RefSeq) ATP-dependent RNA helicase, putative
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
tbg
Trypanosoma brucei gambiense
Pathway
tbg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tbg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TbgDal_XI6470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tbg03041
]
TbgDal_XI6470
Enzymes [BR:
tbg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TbgDal_XI6470
Spliceosome [BR:
tbg03041
]
Complex C
Other components
Step II factors
TbgDal_XI6470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
HA2_N
HA2_C
AAA_22
AAA_19
AAA_30
AAA_16
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
23867660
NCBI-ProteinID:
XP_011779793
UniProt:
D0A778
LinkDB
All DBs
Position
11:1609491..1612631
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AA seq
1046 aa
AA seq
DB search
MLDRRRPRDENVTPSDNPAFKGLLSMKALTTSIETGGSAGDDTEGRMTGNENAEFAYGSG
FYLQEEYLERLRRRGHRLNNTETDNFGDDADNNDRSELSGSRRDRTQRGEASDVELIMDH
NLQPRFFRLGNDFPAVSASSVLDGEGTNESMLPLNVITAHDTAGDIIIPVVSSSCRMAQQ
AQKGSTSLAALKRQQESERATREAMDTSKSQLTRLLQKGEFGQEVEVVDQSHKPKGLDSW
LLDSTRDTEEDLEGEEEMLRRKVRRERMRLENSLNPSSANGAMTAETAAKEEERDVRERN
YLDVQRRRQEKLDRVRDAKEKWERSTNDAEVSGARRIAILTIQRQLPIYRCKEELLRCIG
ENPVSIVVGETGSGKTTQLVQYLYQRGYTRGGGIIGCTQPRRLAAIGVARRVAEEMGCAL
GTRVGYAIHLDDNTSEDTEVKFMTDGVLLREIVRDPNVDKYSVIVLDEAHERSVNTDVLL
GVLQAAVRRRSDLKLVVTSATMDILKFSKFFGNAPCYEIPGQSYEVDVQYATAPIEDYVS
EAVFRVCQLHIQMPLEGKHDILVFMTGRDDVLGVCSLILRRLQEMDPKWLDSLLLLPCLS
EAVGATATGVLDPTPSGMRKCVVATNVAETSLTIDGIRYVVDCGFMKTNVFRPKLGMNTL
QRYPISQAQANQRKGRAGRTAEGICYRLYTESQFKHEMLLSSVPEIQRSSIDSVVLLLKS
IGVSRLIDFDFMDPPPAANIRRSMWQLWVLGLLDDNGNITADGKCALEFPLAPTLAKVLL
ESTVRECSVEAVRVVSVISADPKGLFELPKGSEEAARQHHSRFHVNDSDHLALLNVLTHF
IENGKSRQWARDHFLHLPTLLRACEVQQQLLERLRQLKRPIVSCGAKGLDRVRQCVASGF
CLLSARRSSTNWSAYRPMLNAGVTCYVHPSSAVYARAEMPLYVVYHDLLLTTREYLVIVT
AVEPEWLVEASRGVFIVKGSPKGLVTSAATPSGTAVVENRSVTGRVVSETLQNPSPIPQG
LSVPRPPVHQPKSKGGMVLTRRRNNI
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgcttgaccgccggcggccacgtgatgaaaacgtcaccccgagtgacaaccccgcattt
aaaggcctgttgagtatgaaggcgttgaccacatcaatagaaactggcggatccgccggt
gatgacacggaaggtcggatgactggaaatgaaaacgcagagtttgcttacggtagcggg
ttttatcttcaggaggagtaccttgagcgtctccggcgtcgtgggcatagactcaataac
acggaaactgataattttggtgacgacgcagacaacaacgataggagtgaattaagtggg
agccgcagagataggacacagcgaggggaggcatctgacgttgagcttattatggaccat
aatcttcaaccacgttttttccgccttgggaatgactttccggccgtttctgcgtcgtcc
gtactcgatggggagggtacaaatgaatcgatgttgccactgaatgttatcactgctcac
gacaccgcaggtgatattatcattcctgttgtaagttcaagttgccgaatggcgcaacaa
gctcaaaagggaagcacttcgttagctgctttgaagcgtcagcaggagtctgagcgcgct
acgcgggaggcgatggacaccagtaaatcacagctgacgcgattgcttcaaaagggggaa
tttggccaagaggttgaggttgtagaccagtcgcataagccaaagggactggacagttgg
ttgctggactccacgagggataccgaagaagatctggaaggcgaagaagagatgctgcga
cgcaaagtgcgaagggagcgcatgcggctggaaaattcgttgaacccgtcttctgctaac
ggagcgatgactgcggaaacagcagcaaaagaggaggagcgggatgttcgggagaggaat
tatttggatgtgcagcggaggcgacaggaaaagttggaccgcgtgagagacgctaaggag
aagtgggaacgttcaacaaatgatgctgaggtaagcggagcacggcgtattgcaattctt
acaatacaacgtcagcttccaatctatcgatgcaaagaggagctgctcagatgcatcgga
gagaatccagtttccatcgtagttggcgagaccggaagcgggaagaccacgcaactcgta
caatacctgtaccaacgtggctatactcgtggtggaggaattattggatgtacgcaaccg
cggagacttgccgccataggcgttgcccgtcgtgtagcggaggagatgggttgtgcgtta
ggtactcgagtgggttatgctatccatctcgatgacaacacttctgaggacactgaagtg
aaatttatgacggacggtgtgcttctacgagagattgttcgtgatccgaacgtggataaa
tatagtgtgatagtacttgacgaggctcatgagcggtctgttaacacggacgttttgctt
ggtgtattacaagcggcagtccgccgtcgatcagacctgaaactggtagtaacatctgcc
acgatggatatcttgaaattttcaaagttctttggtaatgcgccgtgttatgagatacct
ggccaatcgtacgaggtggatgtgcagtacgcgacggcccctattgaagattacgtgtcg
gaggcggttttccgcgtgtgccaattacacatccaaatgccactggaaggaaaacatgac
atattagtttttatgacgggtcgtgatgacgtgcttggagtgtgttcacttatccttcgt
cgtcttcaagaaatggatccaaagtggctcgattctcttctgttactaccgtgtttgtcg
gaggcagttggcgcaacggcaaccggtgttcttgatcctacacccagcggaatgagaaag
tgtgttgttgcaaccaatgttgcagagacatccttgaccattgatggtatacgctatgtt
gtggattgtgggttcatgaaaacaaatgtattccgacccaaactcgggatgaatacactg
cagcggtatcccatctctcaggcgcaagcaaatcaacgaaaaggtcgagcgggccgaacg
gcagaaggcatctgctatcgtttatacactgaaagtcagttcaaacacgaaatgcttctt
agtagcgttcccgaaattcagcggagcagtattgatagcgtggtgcttcttcttaaaagt
attggtgtgtcacgcttgattgattttgatttcatggacccaccccctgccgcgaatata
agacgcagcatgtggcaactttgggtactcgggcttctggatgataacgggaatataacg
gcagacgggaagtgcgctttagaatttccacttgcgccgacacttgctaaagtacttcta
gaaagtacggtgcgcgaatgctcggtggaggcggtgcgtgtggtgtcggtgatttcagct
gatcccaaaggactttttgagcttccaaagggtagcgaagaggccgcacggcagcaccac
agtcggtttcatgtgaatgactcagatcaccttgcattacttaacgtcctcacacatttc
atagaaaacggaaagtcacgccagtgggcaagggaccactttctgcatcttcccacacta
ctccgtgcatgcgaagttcaacaacaattactcgaacgtttgcgtcagttgaaacgccct
attgtttcgtgcggcgcgaagggacttgatcgagttcgtcagtgcgtggcctcaggtttt
tgtctcctttcagcacgacggtcgagtacaaactggagtgcctaccgccctatgcttaac
gcgggggtgacgtgttacgtgcatccgtcctctgcagtgtatgcacgcgcggagatgcca
ctttatgtggtttaccacgacctccttctcacaactcgagagtatcttgtaattgtaact
gctgtggaacccgagtggttggttgaggcttctcggggtgtattcattgtgaaaggatca
ccgaagggcctagtgacctcagcggccactccttcgggtaccgcagtggtagagaacagg
agcgtaacaggtcgcgtggtatcggaaaccttgcagaatccatcacccattccacaagga
ttatcagtcccacgtcctccggttcatcaaccgaaatcaaaagggggaatggttcttaca
agacggcgaaacaacatctga
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