Tepidiforma bonchosmolovskayae: Tbon_05170
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Entry
Tbon_05170 CDS
T06308
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tbh
Tepidiforma bonchosmolovskayae
Pathway
tbh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tbon_05170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbh03019
]
Tbon_05170
03400 DNA repair and recombination proteins [BR:
tbh03400
]
Tbon_05170
Enzymes [BR:
tbh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tbon_05170
Messenger RNA biogenesis [BR:
tbh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Tbon_05170
DNA repair and recombination proteins [BR:
tbh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Tbon_05170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
HTH_40
RecQ_Zn_bind
HEM4
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
QFG02708
LinkDB
All DBs
Position
1002079..1004235
Genome browser
AA seq
718 aa
AA seq
DB search
MEGEGSRERGAGSRERGAGSGEQGGFRTGVLYWGAVPGELLRRARAVLRDVFGYGSFRPG
QEAVIADVLAGRDTLVVMPTGGGKSICYQVPALVLERGLTLVVSPLLALMKDQVDALRAM
GVPAAAITSMQEPEEQRAVLAACAQGRVRLLYVAPERFQSGAFLAALRGLEVARLAVDEA
HCISQWGHDFRPSYRDLGALRERLGFPPTVALTATADPLVQQDITERLRLREPAVHVAGF
DRPNLRLETLRVSSLGEKAEAVAEELAGLRGASAIVYCATRRRTEDLAAELQRRGIRCAT
YHAGMADTDRRRVQDAFARDAVRVIVATNAFGMGIDKPDVRLVVHHDLPDSLESYYQEAG
RAGRDGDPARCLLISSPRDRGLREYFIDMAHPSAERVLEIYRALAAAEGRRVHVRDLMRE
DDEPGFNAAVQTLVESGVAVKQGWMLAATRPDGEALIDTAMLEAHREHSFRKLDAMEAYA
QSRTCLRARVLEYFGETPPAACGNCGPCLAGERGREAEGRPAAEEALFQELRAIRRALAE
AEGVPPYIVASDAVLREMARRRPRNRAEMLAVPGMGRVKFERYGEQFLSATRAAAGAAGP
RPAAPGRLARPAVREAATFAPTVRETLSLYADGLRDIGEMAKVRAMAPATIVSHLAELIA
AGAIPSLEGLVAPEKVELVRAAAGGQPIRSLRPLKERLGDAVSYDELHLVRAWLSRRK
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
gtggagggagaagggagcagggagcggggagcggggagcagggagcggggagcggggagc
ggggagcagggcgggtttcgcacaggtgttctatactggggcgctgtgccgggtgagctg
ttgcgcagggcgcgggcggtgctccgcgatgtgttcgggtacgggagcttccggccgggg
caggaggcggtgatcgccgacgtgctggcggggcgggatacgctggtggtgatgcccacg
ggcggcgggaagagcatctgctaccaggtgccggcgctggtgctggagcgggggctcacg
ctcgtggtttcgccgctgctggcgctgatgaaggaccaggtggatgcgctgcgggcgatg
ggcgtgccggcggcagccatcacctcgatgcaggagccggaggagcagcgggcggtgctg
gcggcctgtgcgcaggggcgggtgcggctgctctacgtggcgccggagcggttccagtcg
ggcgcgttccttgcggcgctgcgcgggctggaagtcgcgcggctggcggtcgacgaggcg
cactgcatcagccagtgggggcacgatttccggccgagctatcgcgacctcggggcgctg
cgggagcggctcggcttcccgccgacggtagcgctgacggcgactgcggacccgctggtg
cagcaggacatcacggagcggctgcggctgcgcgagccggcggtgcacgtggcggggttc
gaccgcccgaacctgcggctcgaaaccctccgggtgagcagcctcggcgagaaggcggaa
gcggtggcggaggagctggccggcctgcggggggcttcggcgattgtctactgcgcgacg
cggcggcggacggaggacctggccgccgagctgcagcggcgcggaatccgctgcgcgacc
taccacgcggggatggcagacaccgaccggcgacgggtgcaggatgcgttcgcccgggat
gcggtgcgggtgatcgtggcgacgaacgcgttcgggatgggcatcgacaagccggacgtg
cggctggtggtccaccacgacctgccggattcgctggagtcgtactaccaggaggcgggg
cgggccggacgggacggggacccggcgcggtgcctgctgatctccagtccgcgggaccgg
ggcctgcgggagtacttcatcgacatggcgcacccctcggcggagcgggtgctcgagatc
taccgggcgctggcggcggccgagggacggcgggtgcacgtgcgcgacctgatgcgggag
gacgacgagccggggttcaacgcggcggtgcagacgctggtggaatcgggcgtggcggtc
aagcaggggtggatgctggcagcgacccgcccggacggcgaagcgctgatcgacacggcg
atgctggaggcgcaccgggagcactcgttcaggaagctcgacgcgatggaggcgtacgcg
cagtcgcggacctgcctgcgggcacgggtgctggagtacttcggggagacgccgccggca
gcgtgcgggaactgcgggccgtgcctcgcgggggagcggggccgcgaggcggagggccgg
cccgcggccgaggaggcgctcttccaggagctgcgggcgatccgccgggcgctggcggag
gcggagggcgtgccgccgtacatcgtggcctcggatgcggtgctgcgggagatggcccgg
cgccggccgcggaaccgggcggagatgctggccgtgccgggtatgggccgggtgaagttc
gagcggtacggggagcagttcctttcggcgacgcgggcggctgcgggcgcggccgggccg
cggccggcggcgccggggcgccttgcccggccggcggtgcgggaggcggcgaccttcgcg
ccgacggtgcgggagacgctctcgctgtatgccgacgggctgcgggacatcggagagatg
gcgaaggtgcgggcgatggcgccggcgacgatcgtgagtcacctggcggagctgatcgcg
gcgggggcgattccgtcgctcgaggggctggtggcgccggagaaggtggagctggtgcgg
gctgcggccggcgggcagccgatcaggtcgctgcggccgctgaaggagcggctgggggat
gcggtgagctacgacgagctgcacctggtgcgggcgtggctgtcgcggaggaagtag
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