Tepidiforma bonchosmolovskayae: Tbon_08405
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Entry
Tbon_08405 CDS
T06308
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tbh
Tepidiforma bonchosmolovskayae
Pathway
tbh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tbon_08405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbh03019
]
Tbon_08405
03009 Ribosome biogenesis [BR:
tbh03009
]
Tbon_08405
Enzymes [BR:
tbh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tbon_08405
Messenger RNA biogenesis [BR:
tbh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Tbon_08405
Ribosome biogenesis [BR:
tbh03009
]
Prokaryotic type
rRNA helicases
Tbon_08405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QFG03315
LinkDB
All DBs
Position
complement(1676049..1677638)
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AA seq
529 aa
AA seq
DB search
MKLTRLIDTIARPFRRTAGEEGAPSPTIHSLHSQNGHAAEPAAPAVREPAARGASPGARR
PSRLASTNGRAAASVPAAERAPSQQAPAPTAPATPAQGEAQAGSAPSRRRRRRRGRGTGA
AQAAPGDGRQGRPPALAPISEAFRALGVDATGLEAIAALGFTEPTPIQREAMPRLFAGSD
VVGLAQTGTGKTLAFGLPLARTIDPEAREVQAIVLVPTRELAKQVREVMDHLALFYGFTA
WALTGGSRVQTDIERLSKGVHVVVGTPGRVIDHIKRGTLSLAKVRFVVLDEADQMLDIGF
ARDIDYILRHAPKDRQTALFSATMPESIGRLVWRYMRNAERVAVDPEQRTAEGVEQYYCE
VAERDKLRALQYLYEMRGLGRTLIFCNTKVGVDRLKAALNAAGVPAQAIHGDLRQSQRDR
VMADFRAGRLEFLVATNVAARGLDIPDIEDVVNYDVPQNPEEYIHRIGRTARAGRRGCSY
TFVSEWDVPAWDAIVREVGEGAVQYLPVPARWDIEEPVAAGSGEAAGGS
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
gtgaaactgaccaggctgatcgacacgattgcgcgccctttccggcggactgccggggag
gagggcgccccctctccgaccatccattcccttcattcgcagaacggccatgcggccgaa
cctgccgctccggcggtccgcgagccggctgcgcgcggggcatcgccaggggcgcggcgc
ccgagccggctggcgagcacgaacggccgagctgcggcatccgtcccggcggcagagcgt
gcaccgtcgcagcaggctccggccccgacggcacctgcgactccggcgcagggcgaggcg
caggccggcagcgcaccgtcgcggcggaggcgccgacggcgcgggcgcggcactggtgcg
gcgcaggctgctcccggtgatgggcggcagggccgcccgccggcgctggctccgatttcg
gaggcgttccgcgcgctgggcgtcgatgcgaccgggctggaggcgattgcggcgctgggc
tttacggagccgacgccgatccagcgcgaggcgatgccccggctgttcgccggcagcgac
gtcgtggggctggcgcagacggggaccgggaagacgctggcgttcgggctgccgctcgcg
cggaccatcgacccggaggcccgcgaggtgcaggcgattgtgctcgtgccgacgcgcgag
ctggcgaagcaggtgcgcgaggtgatggaccatctcgcgcttttttacggctttacggcc
tgggcgctgacgggcggaagccgggtgcaaacggacatcgagcggctgtcgaagggtgtc
cacgtggtggtcgggaccccggggcgggtgatcgaccacatcaagcgggggacgctttcg
ctggcgaaggtgcgattcgtggtgctggacgaggcggaccagatgctcgacatcgggttt
gcgcgggatatcgactacatcctgcggcacgcgccgaaggaccggcagaccgcgctgttc
agcgcgacgatgccggagagcatcggccggctggtgtggcggtacatgcggaacgccgag
cgggtggcggtcgacccggagcagcggacggcggaaggggtcgagcagtactactgcgag
gttgcggagcgggacaagctgcgggcgctgcagtacctgtacgagatgcgcgggctcggg
cggacgctcatcttctgcaatacgaaggtgggggttgaccggctgaaagcggcgctgaac
gcggccggggtgccggcccaggcgatccacggcgacctgcggcagtcgcagcgggaccgg
gtgatggccgatttccgggcgggccggctggagttcctggtggcgacgaatgtcgcggcg
cgcgggctggacatcccggacattgaggacgtggtgaactacgacgtgccgcagaacccg
gaggagtacatccaccggatcgggcggacggcgcgggcgggccgccggggctgctcgtac
acgttcgtcagcgagtgggacgtcccggcgtgggatgcgatcgtgcgcgaagtgggcgag
ggcgcggtgcagtacctgccggtgcccgcgcgctgggatattgaggagcccgtcgcggcc
gggtcgggcgaggcggccgggggcagctga
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