Thermobispora bispora: Tbis_2461
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Entry
Tbis_2461 CDS
T01236
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tbi
Thermobispora bispora
Pathway
tbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tbis_2461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbi03019
]
Tbis_2461
03009 Ribosome biogenesis [BR:
tbi03009
]
Tbis_2461
Enzymes [BR:
tbi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Tbis_2461
Messenger RNA biogenesis [BR:
tbi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Tbis_2461
Ribosome biogenesis [BR:
tbi03009
]
Prokaryotic type
rRNA processing factors
Tbis_2461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Imm51
Motif
Other DBs
NCBI-ProteinID:
ADG89164
UniProt:
D6Y4I8
LinkDB
All DBs
Position
complement(2875870..2878842)
Genome browser
AA seq
990 aa
AA seq
DB search
MLENEPFDRAVSSDRDAITDATTEDRDNGSGASEAPSEPEARAARPRRRAASRPAGPPPE
PEDVPPPVQVTTVPAGADHKVSEPVARPIKGARRSAGAVEDEESAPAAERPATEPAEKTA
GGAAEQSARPEPVADEAARAASAEPEAGTAEPEDDRAESAQPALAGERTESGASPTRRRR
IRRRTRSGQAVPSVMTAAVEEVATALRIGPAEDAHGEEPAEPGAAATEAREGEPAAERST
GVVRPDVVTDPFGFNNSAERPAVPKVTFQSPASLFQPIFQPPDPAAAIPLSRRAASDEPE
EAEDHAEAERAEEAGEETATPRRRRRRRGGRGRSRAKEAAETEAQEPEPEPEKTSAEAAG
RSGAAAEEERPAEEEPAAEQTSVEQTSTEQAEAEEQPAETTSETATEQQAAQAEQATGTS
RRRRRRRRRSTEEIEPTPDDPPNTVIRIRAPRTAKPSSSLLDEVQGVRGSTRLEAKKQRR
REGRELGRRRPLILTESEFLARRESVERIMIIRRNAGRTQVAVLEDGVLVEHYVDRESNR
SYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFDSAGLEGQPKRIEAALKSGQ
SVLVQVTKDPIGHKGARLTSQITLPGRYLVYVPDGSMTGISRKLPDKERARLKQILRKVM
PENAGVIVRTAAEGATEEELSRDVARLAAQWESIQRKAKTASPPELLLGEPDLMIRVVRD
IFNEDFSTLIVQGDEAWNTVEEYVRYVAPHLLDRLKKWDEETDVFTAYRIDEQIAKALER
KVWLPSGGSLVIDQTEAMTVIDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDIG
GIIVIDFIDMVLESNRELVLRRLLECLSRDRTKHQVAEVTSLGLVQMTRKRVGQGLLEAF
STPCECCNGRGIIISSEPVEKPEPRGTQGKMAIEKAVAEKLAAAAENKSTSVVAATSTVR
ETVTDSIPVDDGAAAGRAREGRRSRGKAAE
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaaacgagcccttcgacagggctgtgagctctgatcgtgacgcgataacagac
gccacaacagaagaccgtgacaacggctcgggggcgagcgaggctccgtccgagccggag
gcgcgtgcggcgaggccgcgccggcgggccgcgagccgaccggccgggccgccgcccgag
cccgaggacgtgccgccgccggtacaggtgaccacggtgcccgccggggcggaccacaag
gtgagtgagccggtcgcgcgcccgatcaagggcgcccggcgcagcgctggagcggtcgag
gacgaggagagcgcaccggccgccgagcggcccgccaccgagccggcggagaagaccgcc
ggcggggcggcggagcagagcgcaagacccgagcccgtggccgatgaggcggcccgggcg
gcatcggccgagccggaggccgggaccgcggagccggaggacgaccgcgcggagtccgcg
cagccggccctcgcgggtgagcggaccgaatcgggggcctcgccgaccaggcggcgccgg
atcagaaggagaacccggtccggccaggccgtgccgagcgtgatgaccgccgccgtggag
gaggtcgcgaccgccctgcggatcggcccggcggaggacgcccacggtgaggagcctgcc
gagcccggggccgcggccaccgaggcccgggagggcgagccggccgcggagcggtccacc
ggtgtggtccggcccgacgtggtgaccgatccgttcggcttcaacaactccgcggagcgc
ccggcggtccccaaggtgacgttccagtcaccggcgtcgctgttccagccgatcttccag
ccgcccgacccggcggccgccataccgctctcgcgccgggccgcgtcggacgagccggag
gaggccgaggaccacgccgaggccgagcgcgcggaggaggcaggcgaggagaccgccacg
ccgcgccgccggcgccgccgccgtggcggccggggccggtcccgggccaaggaggcggcc
gagaccgaggcccaggagccggagcccgagccggagaagacatcggccgaggccgccgga
cgctccggggcggccgccgaggaggagcggccggcggaggaggagcccgccgccgagcag
acctccgttgagcagacctccactgagcaggccgaggccgaggagcagccggccgagacc
acctctgagaccgccaccgagcagcaggccgcgcaagcggagcaggccaccgggacgtcg
cgccgccgccgtcgccgccgccgccggtccaccgaggagatcgagccgacgcccgacgat
ccgccgaacacggtgatccgcatccgggcgccccgtacggccaagccgagctcgagcctg
ctcgacgaggtgcagggcgtccgcgggtccacccggctcgaggcgaagaagcagcgccgc
cgggagggccgggagctcggccgccggcgcccgctgatcctcaccgagtcggagttcctc
gcccggcgggagtccgtcgagcgcatcatgatcatccgccgcaatgccggccggacccag
gtcgcggtgctcgaggacggcgtgctcgtcgagcactacgtggaccgtgagtcgaaccgg
tcatacgtcggcaacgtgtacctgggcaaggtgcagaacgtgctcccctcgatggaggcg
gccttcgtcgacatcggcaaggggcgcaacgcggtgctgtacgccggcgaggtgaacttc
gactccgcgggcctggagggccagcccaagcggatcgaggcggcgctgaagtccggccag
tcggtgctggtccaggtcaccaaggaccccatcggccacaagggggccaggctcacgtcg
cagatcaccctgcccggccggtacctcgtctacgtgccggacggctcgatgaccgggatc
tcccggaagctcccggacaaggagcgggccaggctcaagcagatcctccgcaaggtgatg
ccggagaacgccggggtgatcgtccgtaccgcggccgagggcgccaccgaggaggagctc
agccgcgacgtggcccggctcgccgcgcaatgggagagcatccagcgcaaggcgaagacg
gccagcccgccggagctgctgctcggcgagcccgacctgatgatccgggtggtccgggac
atcttcaacgaggacttcagcacgctgatcgtccagggcgacgaggcgtggaacacggtc
gaggagtacgtccgctacgtcgcgccgcacctgctcgatcggctgaagaagtgggacgag
gagaccgacgtcttcaccgcctaccggatcgacgagcagatcgccaaggcgctggagcgg
aaggtctggctgccctccggtggttcgctggtgatcgaccagaccgaggcgatgacggtc
atcgacgtcaacaccggcaagttcaccggccagggcggcaacctcgaggagaccgtcacc
cggaacaacctggaggcggcggaggagatcgtccgccagctccggctccgggacatcggc
ggcatcatcgtcatcgacttcatcgacatggtgctcgagagcaaccgcgagctggtgctc
cggcggctgctcgagtgcctgtcccgtgaccggaccaagcaccaggtcgcggaggtcact
tcgctcggcctggtccagatgacccggaagcgggtcgggcagggcctgctcgaggcgttc
tcgacgccctgcgagtgctgcaacggccggggcatcatcatctcgtccgagccggtcgag
aagccggagccgcgcggcacgcagggcaagatggcgatcgagaaggccgtggccgagaag
ctcgccgccgccgccgagaacaagagcacgtcggtggtcgcggccaccagcaccgtgcgg
gagaccgtcaccgattccatccccgtcgatgacggtgccgcggccgggcgcgcccgtgag
gggcggcgctcccgcggaaaggcggcggagtaa
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