Thermobispora bispora: Tbis_2991
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Entry
Tbis_2991 CDS
T01236
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tbi
Thermobispora bispora
Pathway
tbi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Tbis_2991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tbi03400
]
Tbis_2991
Enzymes [BR:
tbi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Tbis_2991
DNA repair and recombination proteins [BR:
tbi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Tbis_2991
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ADG89689
UniProt:
D6Y7H8
LinkDB
All DBs
Position
3515756..3516637
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AA seq
293 aa
AA seq
DB search
MTANVRVRVDGRDLALSNLDKVLYPDTGFTKAEVIDYYARIAPVMLPHLRDRPLTVTRYP
DGAGGEGFYEKNAPAHTPDWVRTVTLPAKGSTKQRDRIDFALVNDLPTLVYYANLAALEI
HVPMWRVGADGTPLPPDTLVFDLDPGAPATIVDCCRVALLLRDALAGDGLTGCVKTSGKK
GIQVYVPWERGHGTAEYARRLARTLEAEHPFVTSVMAKRARPGKVFIDWSQNNPAKTTIA
PYSLRAGRLPTVSTPVRWAEVEACDSPDALTFTASDVLERVAEHGDLFQPGRA
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgacggcgaacgtgcgggtacgggtggacggccgtgacctcgccctgagcaacctggac
aaggtcctctaccccgacaccggcttcaccaaggcggaggtcatcgactactacgccagg
atcgcgccggtgatgctcccgcacctgcgggaccggccgctcaccgtcacgcgctacccg
gacggcgccggcggggagggcttctacgagaagaacgcccccgcgcacacccccgactgg
gtccgtaccgtgaccctcccggccaagggcagcaccaaacagcgcgaccggatcgacttc
gcgctcgtcaacgatctgcccaccctggtctactacgccaacctggccgcgctggagatc
cacgtcccgatgtggcgggtcggcgcggacggcacgccgctccccccggacacgctcgtc
ttcgacctcgaccccggcgccccggccacgatcgtcgactgctgccgggtcgccctgctg
ctccgcgacgcgctcgccggcgacggcctgaccggctgcgtgaagaccagcgggaagaag
ggcatccaggtttacgttccatgggagcgcgggcacggcaccgccgagtacgcccggcgg
ctcgccagaacgctcgaggcggagcaccccttcgtgacgagcgtgatggcgaaacgggcc
cggccggggaaggtgttcatcgactggagccagaacaacccggcgaagaccaccatcgcc
ccgtactcgctgcgggccggccggctgcccacggtctccacgccggtgcggtgggcggag
gtcgaggcgtgcgacagcccggacgcgctcacgttcaccgcctccgacgtgctggaacgc
gtggccgagcacggtgatctgttccagccgggccgtgcttag
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