Thermobispora bispora: Tbis_3135
Help
Entry
Tbis_3135 CDS
T01236
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tbi
Thermobispora bispora
Pathway
tbi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Tbis_3135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tbi03400
]
Tbis_3135
Enzymes [BR:
tbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tbis_3135
DNA repair and recombination proteins [BR:
tbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Tbis_3135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADG89829
UniProt:
D6Y893
LinkDB
All DBs
Position
complement(3679919..3683413)
Genome browser
AA seq
1164 aa
AA seq
DB search
MSLSGLLDLVSAEPRLAATLEEAKESSHPGAELIAPAALRPFVVAALARIRPVLAVTATE
REAEDLAAALDSLMDESGVAVFPAWETLPHERLSPRSDTVGRRLAVLRRLAHPVEGDPAA
GPLRVVVAPVRAVLQPIVAGLGDLEPVRLRPGDEADLDEVVARLVDNGYHRVDMVERRGE
VAVRGGLVDVFPPTEEHPLRMEFWGDTVEEIRWFKVADQRSLEVAPEGLFAPPCRELPLT
EEVRRRARELAGEYPALKDVLDQIADGVPVEGMETFAPVLAGEMNLLLDHMPVRSAVVVC
DPERIRGRAQELVRTAEEFKQASWITAALGGEAPIDLDAVAFRTLEEVHAHARELGRPWW
SVAPFGDGVELDVQGVDQYRGDTERALADIKGWLEAGKTVVLLSEGHGPAERLVELLRGV
DVPARLVPEVADGPVRDVVQVTTGRIAHGFVTPDVAVLTHLDVAGQKASTKDMRRLPSRR
RNMVDPLQLKPGDYVVHEQHGVGRYVEMVQRTVQGATREYLVIEYAKGDRLYVPTDQLDE
VTRYVGGETPTLNRMGGSDWQKTKSRARKAVREIAAELIRLYSARMASPGFAFSPDTPWQ
REMEDAFPYVETKDQLEAIEEVKRDMERPVPMDRLICGDVGYGKTEIAVRAAFKAVQDGK
QVAVLVPTTLLVHQHLSTFGERFAGFPVTVRPLSRFQSDAEIRETLDGLREGTVDVVIGT
HRLLSPDVKFKDLGLLIVDEEQRFGVEHKEAMKRMRTEVDVLAMSATPIPRTLEMGLTGI
REMSTILTPPEERHPVLTFVGPYDEKQIAAAIRRELMRDGQTFFVHNRVRSIDRVAARLA
ELVPEARIAVAHGQMNEAQLEKIMVDFWERAYDVLVCTTIVESGLDVPNANTLIVDRADS
YGLAQLHQLRGRVGRGRERGYAYFLYPPDVPLTETAHERLATIAQHTEMGAGMYVAMKDL
EIRGAGNILGTEQSGHIAGVGFDLYVRMMAEAVEEQKSKLSGQAPKERPEVKVELPINAH
VPHEYVTSERLRLEAYKRIAAIESEEDIAAVREELTDRYGRPPQEVENLLEVARFRIKAR
EAGLTDVTLQGRQIRFSPVTLKDSQRVRLQRLYPKAIYKQATEILLVPVPMTKPVGGRPL
RDLDLLKWCADLVEALFLEPARVQ
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgtctctttccggacttcttgacctggtttccgctgaaccgaggctggccgcgacgctc
gaggaggcgaaagagtcctcgcaccccggtgccgagctgatcgccccggccgcgctgcgg
ccgttcgtcgtcgccgcgctcgcccggatccgacccgtgctcgcggtgacggcgaccgag
cgggaggccgaggacctcgccgccgcgctggacagcctcatggacgagagcggcgtcgcc
gtcttcccggcctgggagacgctcccgcacgagcggctctcgccgcggagcgacacggtc
ggccgccggctcgccgtgctgcggcggctcgcccacccggtcgagggcgaccccgccgcc
ggtccgcttcgggtggtcgtggccccggtccgggccgtgctgcagccgatcgtggccggg
ctcggcgatctggagccggtacggctccgccccggcgacgaggcggacctcgacgaggtg
gtggcccgcctggtggacaacggctaccaccgggtggacatggtggagcggcggggcgag
gtcgcggtgcgcggcgggctggtcgacgtgttcccgcccaccgaggagcacccgctccgg
atggagttctggggtgacacggtcgaggagatccgctggttcaaggtggccgaccagcgc
tcgctcgaggtcgccccggaggggctgttcgccccgccctgccgcgagctgccgctcacc
gaggaggtacggcggcgcgcccgggagctggcgggggagtacccggcgctgaaggacgtg
ctcgaccagatcgccgacggcgtgccggtggaggggatggagacgttcgcgccggtgctg
gccggcgagatgaacctgctcctcgaccacatgccggtccggtcggcggtggtggtctgc
gacccggagcggatccgcggccgggcccaggagctggtgcggaccgcggaggagttcaag
caggcgtcctggatcaccgcggccctcgggggcgaggcgccgatcgacctcgacgcggtg
gcgttccgcaccctggaggaggtgcacgcccacgcccgtgagctgggccggccgtggtgg
agcgtggcgccgttcggggatggcgtggagctcgacgtccagggcgtcgaccagtaccgg
ggggacaccgagcgggcgctcgccgacatcaagggctggctcgaggcgggcaagaccgtg
gtgctgctgagcgagggccacggcccggccgagcgcctggtggagctgctgcgcggggtg
gacgtgcccgcgcggctggtgccggaggtcgcggacgggccggtccgcgacgtggtccag
gtgaccacggggcggatcgcccacggcttcgtcaccccggacgtggccgtgctcacccac
ctggacgtggccgggcagaaggcgtcgaccaaggacatgcggcggctgccgtcccggcgg
cggaacatggtcgacccgctccagctcaagccgggcgactacgtggtgcacgagcagcac
ggcgtgggccggtacgtggagatggtgcagcgcacggtccagggcgccacccgcgagtac
ctggtgatcgagtacgccaagggcgaccggctctacgtgcccaccgaccagctcgacgag
gtcacgcggtacgtcggcggggagacgcccacgctcaaccggatgggcggctcggactgg
cagaagaccaagagccgggcgcggaaggcggtccgggagatcgcggccgagctgatccgg
ctgtactcggcccgcatggcctcgcccgggttcgcgttctccccggacaccccgtggcag
cgggagatggaggacgccttcccctacgtcgagaccaaggaccagctcgaggcgatcgag
gaggtcaagcgggacatggagcggccggtcccgatggaccggctgatctgcggcgacgtg
gggtacggcaagaccgagatcgcggtccgggcggcgttcaaggcggtgcaggacggcaag
caggtggcggtcctggtgccgaccaccctcctggtgcaccagcacctgtccacgttcggc
gagcggttcgccgggttcccggtgacggtgcggccgctgtcccggttccagtccgacgcg
gagatcagggagaccctcgacgggctccgggagggcaccgtcgatgtggtgatcggcacc
caccggctgctctctccggacgtgaagttcaaggacctcggcctgctcatcgtcgacgag
gagcagcggttcggcgtcgagcacaaagaggcgatgaagcggatgcggaccgaggtggac
gtgctcgcgatgtcggccaccccgatcccgcggaccctggagatggggctcaccggcatc
cgggagatgtccacgatcctcacgccgcccgaggagcggcacccggtgctcacgttcgtc
gggccgtacgacgagaagcagatcgcggccgcgatccggcgggagctgatgcgggacggg
cagacgttcttcgtccacaaccgggtgcggagcatcgaccgggtcgcggcccggctcgcc
gagctggtccccgaggcgcggatcgcggtcgcccacgggcagatgaacgaggcccagctc
gagaagatcatggtggacttctgggagcgggcttacgacgtgctcgtctgcaccacgatc
gtggagtccggcctcgacgtgccgaacgcgaacacgctgatcgtggaccgggcggacagc
tacggcctggcccagctccaccagctccgcggccgggtcggccggggccgggagcgcggc
tacgcgtacttcctctacccgccggacgtcccgctcaccgagaccgcgcacgagcggctc
gccaccatcgcccagcacaccgagatgggcgccggcatgtacgtggccatgaaggacctg
gagatccgcggggccggcaacatcctggggaccgagcagtccggccacatcgccggggtg
gggttcgacctgtacgtccggatgatggcggaggcggtcgaggagcagaagtcgaagctc
tccgggcaggccccgaaggagcggccggaggtcaaggtcgagctgccgatcaacgcccat
gtgccgcacgagtacgtgacctcggagcggctccggctcgaggcgtacaagcggatcgcg
gcgatcgagtcggaggaggacatcgccgcggtgcgcgaggagctcaccgaccggtacggc
cggccgccgcaggaggtggagaacctgctcgaggtcgcccgcttccggatcaaggcgcgg
gaggccgggctcaccgacgtgacgctgcagggccggcagatccggttctcgccggtgacc
ctgaaagattcacagcgggtccggctgcagcggctctacccgaaggcgatctacaagcag
gcgaccgagatcctgctggtcccggtcccgatgaccaaaccggtggggggccggccgctg
cgcgacctcgacctgctgaaatggtgtgccgacctggtcgaggcactattcctggaaccg
gcacgagtacagtga
DBGET
integrated database retrieval system
