Hujiaoplasma nucleasis: HF295_03720
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Entry
HF295_03720 CDS
T08014
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tbk
Hujiaoplasma nucleasis
Pathway
tbk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HF295_03720 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbk03019
]
HF295_03720 (rnr)
03016 Transfer RNA biogenesis [BR:
tbk03016
]
HF295_03720 (rnr)
Enzymes [BR:
tbk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HF295_03720 (rnr)
Messenger RNA biogenesis [BR:
tbk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HF295_03720 (rnr)
Transfer RNA biogenesis [BR:
tbk03016
]
Prokaryotic type
tRNA degradation factors
HF295_03720 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
OB_HELZ2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QLY40012
UniProt:
A0A7L6N3J5
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All DBs
Position
complement(808038..810113)
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AA seq
691 aa
AA seq
DB search
MKNKIYHTIKKLNYKKRSLNHIAKILNMKSGEDFQELTKYLNILEKEMKIYRDKSGLYHD
IDNSRYEKGILDLKHQGYGFLVLEDKADIYIPQGKSLTAMNGDLCLVEITRRKSNLKIEG
KVVKILERKMKTIIGEYFEGQVFPKGYSLDIIFELEYKDRKKVNNNQIIKTEIIDYTHPI
VKRVKLLEVLGNATDDGIEILEISHKYGLNNEFSPEELEYANSLPQTVLKEEMQDRKDLR
NEIIFTIDSESTKDIDDAISIKKTKDKNYVLGVHIADVSHYVKEDSVLDKAAYERGTSVY
LADSVIPMLPKALSNGICSLNPNVDRLAMTCQMEINKFGEVIHYEIYPSVIHSQYKMTYT
NINKMIAGDQEIIEEYKDIYQNVLEMKELQDILSAVREKMGSINFETIEPKFIFNQSGKI
TDMIVQERGIGEQMIEEFMLVANQVVASHINHLELPFIYRVHELPNEDKINHVFTMVKEL
GIDIEIDEEMSQELLQKLLKSVEDTKYEKVINTLLLRSMSKARYAKESLGHYGLAFEHYT
HFTSPIRRYPDLIVHRNLRRYLFDNHRKTNDHMISKLDDIAKQSSKQERLAMDAEREIMD
IKKAEYMEQFLNQEFDGVISSVLKFGVFIELPNTVEGLVHISTFKEEMQYDEKNMKLIGL
STNTSYNIGKEVRVKLVKVNKVLGKIDFELV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacaagatttaccataccataaaaaaactaaattataagaaaagaagcttaaat
catatagccaagattttaaatatgaaatctggagaagactttcaagaactgactaagtat
cttaatattctagaaaaagagatgaagatttatcgtgataaatctggtctttatcatgac
atagataattcaagatatgaaaaaggtatcttggatttaaaacatcaaggttatggtttt
ttggtattggaagataaagcagatatttatattcctcaaggtaaatctttaacagctatg
aatggtgacttatgtttagttgagataacaagaagaaaatctaatttaaaaattgaagga
aaagtagtcaaaatattagaaagaaaaatgaaaacaatcataggtgaatattttgaagga
caagtattccctaaaggttattctttagatattatctttgaactagaatataaggataga
aaaaaagtcaataataatcaaatcattaaaactgaaatcattgattatacgcaccctatc
gtcaaaagagtcaaacttttagaagttttaggcaatgcgactgatgatggtattgaaatt
ttggaaatttcacataagtatgggttaaataatgaatttagtcccgaagaattagaatat
gcaaatagtcttccgcaaacagtcttgaaagaagaaatgcaagatcgtaaagatttaaga
aatgaaataatctttaccattgattcagaatctaccaaagatatagatgatgcaatttca
attaagaaaacaaaagataagaactatgtcttaggggttcatattgccgatgttagtcat
tatgtgaaagaagactcggttttagataaagcagcttatgaaagaggaacttcagtttat
ttagctgattcagttatacccatgttgccaaaagccttatctaatggtatttgttcatta
aatcctaatgtagatcgtttagccatgacctgccaaatggaaattaataaatttggcgaa
gtcattcattatgaaatttatccttcagttattcatagtcagtacaaaatgacttacacc
aatattaataaaatgattgctggagatcaagaaatcattgaagagtataaagatatttat
caaaatgtattagaaatgaaagaacttcaagatattttatcagctgttagagaaaaaatg
ggatctattaattttgagactattgaaccaaaatttatttttaaccaatctggtaaaatc
actgatatgatcgtacaagaacgaggtataggagaacaaatgattgaagagtttatgttg
gttgctaatcaagttgtagcgtcacacatcaatcatttagaattaccctttatttatcgt
gttcatgaactacctaatgaggataaaatcaatcatgtattcaccatggtaaaggaatta
ggtattgatattgaaatagatgaagaaatgtctcaagaattattacaaaaactattaaaa
agtgttgaagatactaaatatgaaaaagtcattaatactttattattaagatcaatgtcc
aaggctagatatgctaaagaaagtttaggtcattatggcttagcctttgaacattataca
cattttacttcacctatcagaagatatcctgacttaattgttcatagaaatcttagaaga
tatctttttgataaccataggaaaactaatgatcatatgatttctaaattagatgacata
gccaaacaatcttctaaacaagagcgacttgccatggatgctgaaagagaaatcatggac
attaaaaaagcagaatatatggaacaatttttaaatcaagaatttgatggtgtcatttca
tctgtacttaagtttggggtatttattgaattacctaacactgtcgaaggattggttcat
atttctaccttcaaagaagaaatgcaatatgatgagaaaaatatgaaattaattggtctt
tctaccaatacaagttataatataggtaaggaagtaagagttaaacttgtaaaagttaat
aaagttctaggtaaaattgacttcgagctcgtttag
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