Hujiaoplasma nucleasis: HF295_05300
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Entry
HF295_05300 CDS
T08014
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tbk
Hujiaoplasma nucleasis
Pathway
tbk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tbk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HF295_05300 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tbk03021
]
HF295_05300 (rpoC)
03400 DNA repair and recombination proteins [BR:
tbk03400
]
HF295_05300 (rpoC)
Enzymes [BR:
tbk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HF295_05300 (rpoC)
Transcription machinery [BR:
tbk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HF295_05300 (rpoC)
DNA repair and recombination proteins [BR:
tbk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HF295_05300 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BRE
HMBD
Peptidase_M23
Caudo_TAP
Motif
Other DBs
NCBI-ProteinID:
QLY40305
UniProt:
A0A7L6N5N3
LinkDB
All DBs
Position
complement(1123820..1127497)
Genome browser
AA seq
1225 aa
AA seq
DB search
MSQKFSHLKIRLASPEEIRSWSYGEVKNHETINYRTLKPEKDGLFCERIFGPQKDYQCAC
SNKSKKSSHPGKKCPVCGVEITESKVRRERMGHIELEAPVVHTWYLRNSPSRLATLLDIK
AKDLEEVVYLASYIVTEPGDTDLEYKQVLSERDYTDKYFEFGSRFRALTGAEAIKKLLQD
INLEEETLKLRVELKSASKQRREKIVKRLSVVEAFAQSDNKPEWMVLEVLPVIPPDLRPM
VQLDGGRFATTDLNDLYRRILNRNKRLKRQFQQGAPHLITKNEKRMLQEAVDALIDNSKR
GRKVVVERNRPLKSLSDMLRGKQGRFRQNLLGKRVDYSGRSVIVVGPDLEMYQCGLPKEM
AITLFKPFVIREMIERGISSNLKNAKTLIDRLDDRIWSVLEDVIREHPVLLNRAPTLHRL
GIQAFEPKLVEGKAIRLHPLVTTAFNADFDGDQMAVHVPLSEEAQAEARVLMLASNNILA
PKDGKPIVTPSQDMVLGNYYLTKESQGGKGEGSYFSNYDEVMLAYENGYIDLHTRIALKI
DSHIRMKNNFKPEEHDQGIGFMQENNILSFVDRVPESYLSYFMVTTAGKLIFNKIMPASF
PYINEPTESNLTIQTPSQYFIKPGRNLKEEIEKMPLVKPFDKKFLALIISKIFEKYKINE
TSKMLDKMKNIGFKYSTIAGITIAASDVEVYSKKGDVLKRHEDTVAEIQETYDLGMLTDA
ERKALVIEEWKVAKKEVETGLADEMKEDNHIYMMSNSGARGNIQNFTQLAGMRGLMANPS
GGTIELPIKASFIEGLTMSEFFISTHGARKGSTDTALKTAESGYLTRRLVDVSQEVVISI
EDCGTDKGVYLDEVLDRDGKVIVTLEDRINGRYPSADVFHPETGEILVHRNEYISEKKAK
MIVEAGVKRVPIRTALSCTAEVGICRKCYGQNLATGEKAEVGESVGVIAAQSIGEPGTQL
TMRTFHTGGVAGDDITQGLPRVQELFEARKSKKKAIISEISGVIIDVEKDNSRTIIHIKS
DVEEKKYTTNPKATIIVEKGQEVKAGQQLVEGTIDPKELLRVTDVETVQKYIINEVQRVY
QSQKVDISDKHIEIIVRQMTRRMTVVLEGDTDLLPGSQVSINQFVEANKKVLQEGLKPAV
ARPILLGITKASLKSESFLSAASFQETTRVLTDATIRGMHDPLVGLKENVIIGGLIPAGT
GILRDTEFHYEEAIVEEDPYEEYEE
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaaaaattttcacatttgaagattagattagcctctcctgaagaaataagatct
tggtcttatggagaagttaaaaatcatgaaacaattaactaccgtacattgaaaccagaa
aaagatggtttgttttgcgaaagaatctttggacctcaaaaagattatcaatgtgcatgt
tcaaacaaatctaaaaaatcttctcatccaggaaaaaaatgtccggtttgtggtgtagaa
attactgaatctaaggttagaagagaaagaatgggtcatatcgagttagaagcacctgtt
gttcatacttggtatttaagaaactctccttctcgtttagctacccttttagatatcaaa
gccaaagacttagaggaagttgtatatttagcttcttatatagtcactgaaccaggagat
acagatttagaatataaacaagtattatctgaaagagattatactgataagtattttgaa
tttggttctcgctttagagctttaactggtgcagaagccattaaaaagttattacaagat
attaatttagaagaagaaactttaaaattaagagttgagttaaaatcagcgtctaaacaa
agacgtgaaaaaatcgttaaaagattatcagtggttgaagcatttgctcaatctgataat
aaacctgaatggatggttctagaagtattaccagtcattccaccagatttaagacctatg
gttcaactagatggtggacgttttgcgacaactgaccttaacgatttatacagaagaatt
ttaaatagaaataaacgtttaaaaagacaattccaacaaggtgcaccacaccttattact
aaaaacgaaaaaagaatgttacaagaagcagtagatgctttaattgataattcaaaacgt
ggacgtaaagttgttgttgaaagaaatagacctttaaaatctttatcagatatgttaaga
ggtaaacaaggtcgtttcagacaaaacctacttggtaaacgtgtggattattctggacgt
tcagttatcgttgtaggaccagatttggaaatgtaccaatgtggattgccaaaagaaatg
gcgattactttattcaaaccatttgtgattagagaaatgattgaaagaggtatctcttcg
aatcttaaaaatgctaaaaccttaatcgatagattagatgatagaatttggtcagtactt
gaagatgtgattagagaacatcctgttcttttaaaccgtgcaccaaccctacatagatta
ggtattcaagcttttgaacctaaacttgtggaaggtaaagctattcgtttacatccattg
gtaaccacagcatttaatgctgactttgatggtgaccaaatggcggttcatgttccttta
tcagaagaagctcaagctgaagcaagagttttaatgttagcatctaacaatattttagca
cctaaagatgggaaaccaattgttacaccatcacaagatatggtattgggtaactattac
ttaacaaaagaatctcaaggtggtaaaggagaaggttcttacttctctaactatgacgaa
gtcatgttggcttatgaaaacggatatattgatttacacactagaattgctttgaaaatc
gattcacatattcgtatgaaaaacaactttaaacctgaagaacatgatcaaggtattggt
tttatgcaagaaaacaatattttatcatttgttgatagggttcctgagtcatacttgtca
tactttatggtaacaactgctggtaaattgatttttaataaaatcatgcctgcaagtttc
ccatatattaatgaacctactgaatcaaacttaaccattcaaacaccaagtcaatatttt
attaaaccaggtagaaacttaaaagaagaaatcgaaaagatgcctttagttaaacctttt
gataagaaattcttggctttgattatttcaaaaatatttgaaaaatataaaattaatgaa
acatctaaaatgttggataaaatgaagaatattggtttcaaatattcaacaatagctggt
attaccatagcagcgagtgatgttgaagtttatagtaaaaaaggcgacgttctaaaaaga
catgaagatactgtggctgaaattcaagaaacatatgacctaggtatgttaacagatgct
gaaagaaaagccttggttattgaagaatggaaagtagctaaaaaagaagttgaaactgga
cttgctgatgagatgaaagaagataatcatatttatatgatgtctaactcaggtgctcgt
ggtaatatccaaaacttcactcagttagctggtatgcgtggattgatggccaacccatct
gggggaaccattgagttacctattaaagcatccttcattgaaggtttaaccatgtcagag
ttctttatctctacccatggggctagaaaaggttctacggatacagccttaaaaactgct
gagtcaggttacttaacaagacgtttagttgacgtttctcaagaagttgttatttctatt
gaagattgtggaacagataaaggtgtatacctagatgaagttcttgatagagatggcaag
gttattgttacattagaagatagaattaatggacgctacccatcagcggatgtattccat
ccagaaactggcgaaatcttagttcatagaaatgaatatatctctgagaaaaaagcaaaa
atgattgttgaagctggtgttaagagagtgcctattagaaccgctttatcttgtacagct
gaagttggtatttgccgtaagtgttatggtcaaaacctagcgacaggtgaaaaagctgaa
gttggagaatctgtaggtgttattgctgctcaatctattggtgaacctggtacacagtta
accatgagaaccttccatactggtggggttgctggagatgacattacccaaggtttacct
cgtgttcaagaattatttgaagcacgtaaatctaagaaaaaagctattatttctgaaata
tctggtgtaatcattgatgttgaaaaagataatagtcgcaccatcatccatattaagagt
gatgtagaagagaaaaaatacaccacaaaccctaaagcaacaattattgttgaaaaaggt
caagaagtgaaagctggtcaacaattggttgaaggaacgattgatcctaaagagttatta
agggttactgatgtggaaactgttcaaaaatatattattaacgaagtacaaagagtatac
caatcacaaaaagttgatatctcagataaacatattgaaattattgtgagacaaatgaca
agaagaatgacggttgtattggaaggggatactgatttattaccaggatctcaagtttca
atcaatcaatttgttgaagctaataaaaaagttttacaagaaggattaaaacctgcagtt
gctagacctatcttattaggtattactaaagcaagtttgaaatcagaatcattcttatct
gctgcttctttccaagaaacaactagagtcttaacagacgctaccattagaggtatgcat
gatccacttgttggtttaaaagaaaatgttattatcggcggattgattccggcgggtaca
ggtatcttaagagacacagaattccattacgaggaagctattgttgaagaagatccttac
gaagaatacgaagagtag
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