Hujiaoplasma nucleasis: HF295_07375
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Entry
HF295_07375 CDS
T08014
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tbk
Hujiaoplasma nucleasis
Pathway
tbk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HF295_07375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbk03019
]
HF295_07375
03009 Ribosome biogenesis [BR:
tbk03009
]
HF295_07375
Enzymes [BR:
tbk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HF295_07375
Messenger RNA biogenesis [BR:
tbk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HF295_07375
Ribosome biogenesis [BR:
tbk03009
]
Prokaryotic type
rRNA helicases
HF295_07375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
Cas3-like_C_2
CMS1
SwrA
HB_ELP1
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QLY40676
UniProt:
A0A7L6N322
LinkDB
All DBs
Position
1519735..1521360
Genome browser
AA seq
541 aa
AA seq
DB search
MNYKNKLIEQALTQMGFEEFTEIQAKAMPLIEEGKDIIGHSQTGTGKTAAFALPLLDRID
YENQNIQSIIICPTRELAVQVKSEIDSMGQYLPKLKTVAIYGGEAITIQIKSLKYKPQVI
IGTPGRIIDLMKRKLIKLHDISYLVLDEADEMLKMGFIEDIETILEQTNPERQTVMFSAT
MPKRIIDITKKYMNNPELVSVVTGEEPNEDITQYYYLIQDKHKIEGITRLLHVYNPNLTL
VFCNTKRKVDDVTRELSKKGYNVNKIHGDLKQTNRLQVLDSFHNGELDILVATDVAARGL
DIKNVEVVINYDVPEKAEYYVHRIGRTGRIGNKGYSFTLVSKREMSRIDIIQNFTKTKIK
KRKIPTPDTVLKIKQEHQIYDIEQIIEHINLSPYLDTATLLLESKEPVEIISALLHKIDK
NQVTEKVEGDINEDFTSKGNSRSQSRTSSRSSNPRVKGDSQRYHLNVGSESGLTPKQLVN
FIIKKTKLSNFDINDVSVSKQASFFNVPSRHHDMVMSALANINLSGINTSVQMAKPTKRR
Y
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgaactataaaaacaaattaattgaacaagcattaacacaaatgggctttgaagaattt
actgaaattcaagccaaagccatgccattgattgaagaaggaaaagatattattggtcat
tcgcaaacaggaactggtaaaacagctgcttttgcattaccattattagatcgtattgat
tatgaaaaccaaaacattcaatcaattattatttgtccaacaagagaacttgctgtacaa
gtaaaatcagaaatagattctatggggcaatacttaccgaagttaaaaactgtagcgatt
tatggtggtgaagccattaccattcaaatcaaaagtttaaaatataagccacaagtgatt
attggaacaccaggaagaattattgatttaatgaaaagaaaactcattaaattacatgat
atttcttatcttgtcttagatgaagcagatgaaatgttaaaaatgggatttattgaagac
attgaaaccattttagaacaaacgaatccagaaagacaaacggttatgttctctgcgaca
atgcctaaaagaatcatcgatattacgaagaaatacatgaacaatccagaactagtttca
gttgtgactggtgaagaacctaatgaagatattactcaatattattatttaattcaagac
aaacataaaattgaaggtatcacaagattattacatgtatacaacccaaatttaacctta
gttttttgtaataccaaacgtaaagtagatgatgttactagagaattatcaaaaaaaggt
tataatgttaataaaatccatggggatttaaaacaaaccaaccgacttcaagtcttagat
tcatttcataatggagaactagatatcttagtagccactgatgttgctgctaggggcttg
gatattaaaaacgttgaagttgttattaactatgatgtgcctgaaaaagcagaatattat
gttcatcgtattggtcgaactggtcgtattggtaataagggttattcattcaccttggtt
tctaaacgtgaaatgtcaagaattgatataattcaaaatttcactaaaacgaagattaag
aaaagaaaaataccgacacctgatacagtactaaaaattaaacaagaacatcaaatttat
gatattgaacaaatcattgaacatattaatttaagtccatatttagatacagcgacttta
ttattagaatcaaaagaacctgttgagattatttcagccttattacataagattgataaa
aatcaagtcactgaaaaagtagaaggtgatatcaacgaagactttacttctaaaggtaat
tctagatctcaatcaagaacttcatcaagatcaagtaatccaagagttaagggagatagt
caaagataccatttaaatgttggtagtgaatctggattaacacctaaacaattggttaac
tttatcataaagaaaaccaagttaagtaactttgatatcaatgatgtatcagtaagtaaa
caagcatctttctttaatgttccttcaagacaccatgacatggttatgtctgcattagcg
aacataaacttaagtggtatcaatacttcagtacaaatggctaagcctacaaaaagaaga
tactaa
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