Thiolapillus brandeum: TBH_C0294
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Entry
TBH_C0294 CDS
T03600
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tbn
Thiolapillus brandeum
Pathway
tbn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tbn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TBH_C0294 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tbn03021
]
TBH_C0294 (rpoC)
03400 DNA repair and recombination proteins [BR:
tbn03400
]
TBH_C0294 (rpoC)
Enzymes [BR:
tbn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TBH_C0294 (rpoC)
Transcription machinery [BR:
tbn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TBH_C0294 (rpoC)
DNA repair and recombination proteins [BR:
tbn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TBH_C0294 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BAO43240
UniProt:
A0A7U6JHI0
LinkDB
All DBs
Position
332359..336591
Genome browser
AA seq
1410 aa
AA seq
DB search
MKDLLKILKQQGQNEEFDAIRIGLASPDMIRSWSFGEVKKPETINYRTFKPEREGLFCAK
IFGPVNDYECLCGKYKRLKHRGVVCEKCGVEVTLSKVRRERMGHIELASPVAHIWYLKSL
PSRIGLLLDMTLKSIERILYFESYVVIDPGMTMLERGQLMNDEQYLEAIEENGDEFDARM
GAEAVNELLMSLDIPAEILRLREEIGATNSETKIKKIAKRLKLLESLEESGNRPEWMILK
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELTAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKRMALELFKPFIFAKLQSRGLATTIKAAKKLVDRGAAEVWDILENVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RTLMMASNNILSAANGEPIIVPTQDVVLGLYYMTRERINGKGEGMMLADIAEARRAYESG
QAELHARVKVRIDEEVLQEDGSYLPQQTIYDTTVGRAILWEIIPHRLSYEKLINTVLNKK
AISRLVNTSYRELGLKETVVFADQLMYMGFRMAAKAGASVCADDMVVPAEKEALLAAAEK
EVKEIEDQYASGLVTNGERYNKVIDIWSHANDQVAKAMMDQLGSETVIDRDGNKVKQDSF
NSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLDVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVITGEDCGTENGLLMQPIIEGGDVVEALRERI
LGRVTAKDVYKPGSDDVLLEAGVLLDEALVDMLEEEGVDQVTVRSAISCEAQYGICSACY
GRDLGRGHGVNIGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRSAAVSSIEVKNVGTVT
LNNIKTVERGDGKLVAVSRSGEIIVHDTRGSERERYKLPYGAELQVKNGDAVEAGQLVAT
WDPHTHPVITEVAGTLRFVDFVDGVTVQTKTDDVTGLTSLEVMDPKQRPTSGKDLRPMVK
LVDEKGNDINLAGTTLPANYVLPAGAVVSVQDGAQVGVGDVLARIPQESSKTRDITGGLP
RVADLFEARKPKEPAILAEASGTIGFGKDTKGKQRLVITMSDGEQVESLIPKWRHVDVFE
GEHVEKGEVIADGELNPHDILRLRGVTALAEYLVQEIQDVYRLQGVGINDKHIEVIIRQM
LRKVEIVDGGDTKLLRGEQISRYRVLEENRKVEKEKGMPATWEPLLLGITKASLATESFI
SAASFQETTRVLTEASVRGAEDRLHGLKENVIVGRLIPAGTGLAFHEERRKRRHEESLAE
GEPVEMANEDVEAVIKEALSSSEAAPEAES
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatcttttgaagattctgaagcaacaggggcagaacgaagagttcgatgccatt
cgcattggtctggcctcaccggacatgatccggtcctggtcctttggcgaggtaaagaag
cccgagaccatcaactaccgtaccttcaagccggagcgggaaggcctgttctgcgccaag
atctttggcccggtgaacgactacgaatgcctgtgcggcaagtacaagcgcctcaagcat
cgtggcgtggtgtgcgagaaatgcggcgtggaagtcaccctgtccaaggtgcgccgggag
cgcatggggcacatcgaactggccagcccggttgcgcatatctggtatctcaagtctctg
ccttcgcgcattggcctgctgctggatatgaccctgaagagcatcgagcgcatcctgtac
ttcgaatcctacgtggtcatcgatcccggtatgaccatgctcgagcgcggtcagctgatg
aacgacgagcagtatctcgaagccattgaggagaatggtgacgagttcgatgcccgcatg
ggtgccgaggccgtcaacgagctgctcatgtctctggatattcccgccgagatcctgcgt
ctgcgcgaagagattggtgccaccaattccgagaccaagatcaagaagatcgccaagcgt
ctcaagctgctggaatccctggaagagtccggcaaccgtcccgagtggatgattctcaag
gtgctgcccgtgctgccccccgagttgcgtcccctggtgccactcgacggcgggcgtttc
gccacctcggatctgaacgatctgtaccgccgggtgatcaaccgcaacaaccgcctcaag
cgtctgttggagctcaccgcgccggacatcattgtgcgcaacgagaagcgtatgctccag
gaagccgtggatgccctgctggacaatggccgtcgcggacgcgccatcaccggcaccaac
aagcgtcccctgaaatccctggccgatatgatcaagggcaagcaggggcgcttccgccag
aacctcctgggcaagcgcgtggattactccggccgttccgttatcgtggtgggcccgact
ttgaaactgcaccagtgcggcctgcccaagcgcatggccctggagctgttcaaacccttc
atcttcgccaagctgcaatcccgtggcctggccaccaccatcaaggcagccaagaagctg
gtggatcgcggcgccgcggaagtctgggatatcctggagaacgtcatccgtgaacatccg
gtgatgctcaaccgggcgcccaccctgcaccgtctgggcattcaggctttcgagcccgtg
ctcatcgaaggcaaggccattcagctgcatcctctggtatgtactgccttcaacgccgac
ttcgacggcgaccagatggcggtgcatgtgcccctttccctggaagcccagttggaagca
cgtaccctgatgatggcgagcaacaacattttgtctgctgccaacggtgaacccattatc
gtacctacccaggatgtggtgctgggcttgtactacatgacccgtgaacgcatcaacggc
aagggcgaaggcatgatgctggcggacattgccgaagcgcgtcgtgcctacgagagcggc
caggcagagctgcatgccagggtcaaggtgcgtatcgacgaagaagtgttgcaggaagac
ggcagttaccttccccagcagaccatttacgatacgactgtgggccgtgccattctgtgg
gagatcatccctcaccggctgtcctacgaaaagctcatcaataccgtgctcaacaagaag
gccatctcccgcctggtgaataccagctaccgggaacttggactcaaggaaacggtagtc
tttgccgaccagctcatgtatatgggcttccgcatggcagccaaggccggtgcttccgta
tgtgccgatgacatggtggtgcccgcagagaaggaagcattgcttgccgccgcggaaaag
gaagtcaaggagatcgaggatcaatatgcctctggtctggtgaccaatggtgagcgctat
aacaaggtcatcgatatctggtcccatgccaatgaccaggtggccaaggcgatgatggat
cagctgggttcggaaaccgtgatcgacagggacggcaataaggtcaagcaggattctttc
aattccatcttcatgatggcggattccggcgcccggggttctgcggctcagattcgtcag
ctcgccggtatgcgggggcttatggccaagccggacggctccatcatcgaaacgccgatt
accgccaacttccgggaaggtctggacgtacttcagtactttatctcgactcatggtgca
cgcaagggactggcggatacggcgctgaagacggccaattccggttatctgacccggcgt
ctggtggacgtggcccaggatctggtgatcactggcgaagactgcggtacggaaaatggt
ctgctgatgcagcccatcatcgaaggtggtgatgtggtggaagctctgcgagagcgtatt
ctgggccgggtgacggcgaaagatgtctataagcctggcagtgatgacgtcctgctggaa
gctggtgtattgctggatgaagctttggtggatatgctggaagaagagggcgtggatcag
gtaaccgtgcgttctgcaatcagctgtgaggcccagtatggtatttgtagtgcctgctat
ggccgtgaccttggtcgtggccatggagtgaatatcggtgaggcggtaggcgtggtagca
gcacagtccatcggcgaacctggtacccagttgaccatgcgtaccttccacatcggtggt
gcggcttcccggtctgctgcagtgagcagtatcgaagtgaagaacgttggtactgtaacc
ctgaataacatcaagaccgttgaacgtggtgacggcaagctggtggccgtgtcccgttcg
ggtgagatcatcgttcatgatacacgcggttccgaacgtgagcgctacaagcttccctac
ggtgccgagctgcaggtgaaaaacggcgatgccgtggaagccggccagctggtggcaacc
tgggatccccatactcacccggttatcacggaagtggcgggtacgctgcgttttgtcgat
tttgtggacggcgttacggtacagaccaagaccgacgatgtcaccggcctgacttccctg
gaggtcatggaccccaaacagcgtcccaccagtggcaaggatctgcgccccatggtcaaa
ctggtcgatgaaaagggcaatgacatcaacctggctggcaccaccctgccggccaactac
gtgctgcctgcgggtgcagtggtcagcgttcaggatggcgcgcaggttggcgtgggcgat
gtgttggcccgcattccccaggaatcctccaaaacccgcgatatcacgggtggtcttccc
cgggttgccgacctgtttgaagcgcgtaagcccaaagaacccgctattttggcggaagcc
agtggcaccattggtttcggcaaggataccaagggcaaacaacgtctggtgatcaccatg
tcggatggcgagcaggtcgagtccctgattcccaaatggcgtcacgtggatgtgttcgag
ggcgagcacgtggagaagggcgaagtcattgctgatggcgaattgaaccctcatgacatc
ctgcgcctgcggggtgtgacggcactggctgaatatctggtgcaggagatccaggatgtg
tatcgccttcagggcgtaggcatcaacgacaagcatatcgaggtcatcatccgccagatg
ttgcgcaaggtggagattgtcgatggcggtgataccaagttgctgcgcggggaacagatt
tctcgttaccgtgtcctggaggaaaaccgcaaggtagagaaagaaaaaggcatgcctgct
acctgggagcctctgcttctcggcatcaccaaggcatccttggctacggaatcctttatc
tctgccgcatccttccaggaaaccacccgagtgcttacggaagcctctgtgcgtggtgcc
gaggacaggctgcatggtctcaaggaaaatgtcatcgtgggccgtctgatccctgctgga
accggattggccttccatgaggagcggcgcaagcgccgtcatgaggaatccctggctgaa
ggcgaaccggtagagatggccaacgaagacgtggaagcggtcatcaaggaagcattgagc
agttcggaagcggctccggaggctgaatcctga
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integrated database retrieval system
