Thermoanaerobacter brockii: Thebr_0949
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Entry
Thebr_0949 CDS
T01409
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tbo
Thermoanaerobacter brockii
Pathway
tbo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thebr_0949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbo03019
]
Thebr_0949
03400 DNA repair and recombination proteins [BR:
tbo03400
]
Thebr_0949
Enzymes [BR:
tbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Thebr_0949
Messenger RNA biogenesis [BR:
tbo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Thebr_0949
DNA repair and recombination proteins [BR:
tbo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Thebr_0949
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADV79529
UniProt:
E8URK6
LinkDB
All DBs
Position
970676..973933
Genome browser
AA seq
1085 aa
AA seq
DB search
MDITNIVFEKLCSVLDKLKRENNKTIVFLKGFPALYYKLLRMNGYEALGSNKWLNEEGYI
DVRQLEADKNNLLIKFLTKESNFLWGFYEEFIALSNMINDIKTQYKGTIIILENNLFDKY
YPLDIENDIISKLSSYFNNESSDITDDILVYTNYYSSVEFYPEGQVGLAYINRHEDEDIK
SISFYETEADLNVNEKFMSSYKITARDPYIFCLKNYLQRGIPIGNIQIIIDGKIDEKAIM
PFVNLLTLTKTQFRICRNERFKELTKEDGDKYTNILHKYWEKGSSFRNLLFYKNPDISNE
LVEISQGHIISDIISQCEIAISGSNGYSDIFITSPTGSGKSLLFQIPAIYLSEKYKAVTI
VITPLIALMVDQVTQLTDLGLENVTFVNSDIPFDEKERRLKKIKEGEYSIVYLSPELFLA
NSIESLIGERRIGLLVIDEAHLVTTWGRDFRADYWYLGEYIEKLRKLNHDKFNFPVLCLT
ATAVYMGTEDTVNDTIVSLSLRNPKIYLGNVKRNNIHFEINKIDTKSITGSLENFKIEKT
KENIIKCIDNNIKCIVYCPYTTQVEDVFNSLNEKYKKRVGKYYGSFDKYEKSEAQYKFKY
GDYTVMISTKAFGMGVDIKDIEKVYHLAPTGNLADYVQEIGRAARNQEIKGIAATDFTSN
DLKYVRMLYGLSGMKQYQLKEMIRKLYNIYKEKKSRNLLISPEAFSYLFDENDLENKVKS
GLLLLSKDFENKYGFPVLVVRPKSLFTKNFVNVPFAIEKEFLKEYGRYARLIEDDSVRII
PSFNSNFGDTYIYNTGHIYEINMSELWEKHFNYLTFAQFKKKFFEGELFKFNSDEKLSPR
LNLKITYHEDFEIAWEKLKKYSENLVNLFSELKSKRQVFTKNKFKEKFKEYFGNIKNNEI
PGIVLDMFVADISQNIGFNQNADKFKFIQQRREMNQDEIVYRIMNSSYVMLKNYLSRLIS
SCKPQDNSDTFSTYIAITNNSKRPDLIYLAVLLELFGLASYEVIGGKNTEIFVRINDPVK
LRRFASQNYSNSILTEIERKRRRSQEVLIGFMSSDLSDEERWNVIENYFLGRDDEVSRLL
KLKES
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atggatataactaatattgtttttgaaaagttatgttcagttcttgataaattgaaaaga
gaaaataataaaactatagtttttctaaaaggatttccagcattatattataaattactg
agaatgaatggatatgaagctttaggaagtaataaatggttaaatgaagaaggctatata
gatgtaaggcaattagaagctgataaaaacaatcttttaattaaatttttgactaaagaa
tctaattttctttggggtttttatgaagaatttattgccttgtcaaatatgataaacgat
attaaaactcaatataaaggaaccattataatactagaaaataatctttttgataaatat
tatcctttggatatagaaaatgacataatatcaaaattaagtagctattttaataatgaa
agttcagatattactgatgatattttggtgtatacaaattattatagtagtgtagagttt
tacccagaaggtcaagtagggctagcttatattaataggcatgaagacgaagacataaaa
tcaatttctttttatgagaccgaagctgatttaaatgttaatgaaaaatttatgagtagc
tataaaattacagctagagatccgtatatattttgcttaaaaaattatttacaaagagga
ataccaataggaaatatacaaataattattgatggcaaaattgacgaaaaagctattatg
ccttttgtaaatcttttaacacttacaaaaacccaattccgtatttgccgaaatgaaaga
tttaaagaattaacaaaagaagacggtgacaaatatactaatattttacataaatattgg
gaaaaaggtagttcgtttaggaatttgctattttataaaaatccggatatttcaaatgaa
ttagtagagatatcacaagggcatattataagtgacattataagtcaatgtgagattgca
ataagtgggtcaaatggatatagtgatatatttataacttctccaactggctcaggcaaa
tcgcttttatttcaaattccggctatttatctttctgagaaatacaaagcggtaacaatt
gttataactccattaattgcattaatggtagatcaagtaactcaacttactgacttaggt
cttgaaaatgtgacctttgtaaattcagatataccgtttgacgagaaagaaagaagatta
aagaaaatcaaagaaggagaatattcaattgtatatctgtcaccagaattatttttagca
aactcaatagaaagtcttataggggagcgtaggataggacttttagttattgatgaggct
catcttgttactacttggggcagagatttccgtgcggattattggtatcttggtgaatat
attgagaagttaagaaaattgaatcatgataaatttaattttcctgtactctgcttaaca
gctacagcagtttatatgggtaccgaggatactgttaatgatactatagtaagtcttagt
ttgcgaaatcccaaaatttatttaggaaatgtaaagagaaataatatacattttgaaatt
aataaaattgatacaaaatctataactggaagtttggaaaatttcaaaattgagaaaaca
aaagaaaatattataaaatgcattgataataacattaaatgtatagtttattgtccatat
acaacacaagttgaagatgtatttaacagtctcaacgaaaaatacaaaaagcgtgtaggg
aaatattatggttcttttgataaatatgagaaatcagaagcgcaatataaatttaaatat
ggtgattatacagtaatgatatctacaaaagcttttggcatgggggtcgatattaaagat
atcgaaaaagtttatcatttggcacctacaggcaatctcgcagactacgttcaagagata
gggagagcagcacggaatcaagaaataaaaggaattgctgcaactgattttacttcaaat
gatttaaaatatgtgagaatgctttatggattgtctgggatgaaacaatatcaattaaaa
gaaatgataagaaagttatataatatatacaaagagaagaaaagtaggaatttacttata
tcgccagaagcattttcgtatttatttgatgagaacgatctagaaaataaggttaaaagt
ggattgttattattatcaaaggattttgagaacaaatatggatttccggttttagtggta
aggcctaaaagtttatttacaaaaaattttgtgaatgtcccttttgcaatagaaaaagaa
tttttaaaagagtatggaagatatgcaagattaattgaagatgattcagttcggataatc
ccttctttcaattctaattttggagatacttatatttataatactgggcatatttacgaa
attaatatgtccgaattatgggaaaagcattttaattatttaacatttgcacaattcaag
aaaaaattttttgaaggtgaattatttaaattcaatagcgacgaaaaattgtcaccaaga
ttaaatttaaaaataacttatcatgaagactttgaaattgcttgggaaaagctaaaaaaa
tatagtgagaatttggttaacttattctctgagttaaaatcaaaaaggcaagtatttact
aaaaataaattcaaggaaaaatttaaagaatattttggtaatataaaaaataatgaaata
cctggcatagtccttgatatgtttgttgctgatatttctcaaaatataggatttaatcaa
aatgctgataaatttaaatttattcagcaaagaagagaaatgaatcaagatgaaattgtt
tatagaataatgaattccagctatgtaatgctgaaaaattatttatcaagattaatttct
tcatgcaaaccgcaagataattcagatacattttctacttatatagcaattactaataac
agtaaaagaccagatttaatatatttggcagtattattagagctatttggacttgctagt
tatgaagtaattggtggtaaaaatacagagatatttgtaaggataaatgaccctgttaaa
ttaagacgttttgcaagccaaaattactctaattcaattttaactgagattgaaaggaaa
agaagaagaagccaagaagtgctgataggatttatgagtagcgatttatctgatgaagaa
agatggaatgtaattgaaaattactttttaggaagagatgatgaagtatctcgactccta
aaattaaaagagtcataa
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