Thermoanaerobacter brockii: Thebr_1084
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Entry
Thebr_1084 CDS
T01409
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
tbo
Thermoanaerobacter brockii
Pathway
tbo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thebr_1084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbo03019
]
Thebr_1084
Messenger RNA biogenesis [BR:
tbo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Thebr_1084
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Lactamase_B_6
HI0933_like
Motif
Other DBs
NCBI-ProteinID:
ADV79660
UniProt:
E8USD1
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All DBs
Position
1111922..1113586
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AA seq
554 aa
AA seq
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MAHKAKLKIIPLGGLNEIGKNMTVFEFGNDIIVVDCGLAFPDDEMLGIDLVIPDITYLLK
NREKVRAIVLTHGHEDHIGALPYILKQLNVPVYGTRLTIGLVEYKLKEQGILKDSKLITV
KPREIVEIGQFKVEFLRTSHSIADSAALAIHTPVGTVFHSGDFKIDFTPIGGEIADLHRF
AQLGEKGVLVMLCDSTNIERPGYTMSERTVGETFDNLFRKAEQRIIVTTFASNIHRVQQI
IDSAHKYGRKVAISGRSMLNVVNVAMELGYLIVPDGLLIDIDEANKLPHDKVAIITTGSQ
GEPMSALTRMASSEHKKVEIVPGDTVIISASAIPGNEKLISRVINQLFKKGANVIYEALA
DIHVSGHACQEEIKLLHTLIKPKFFIPVHGEYRHLVQHAKLAETLGMPPQNIFIVDNGTV
LEFTKNSGRIAGTVTAGKVLVDGLGVGDVGNIVLRDRKHLAQDGLLVVVVTISKETGGII
AGPDIISRGFVYVRESEDLMEESKNVVRDVLSKCKKEGISEWATIKSMIKDDLSSFLYEK
TKRNPMILPIIMEI
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
ttggcacacaaggcaaaactcaaaataataccgttgggcgggttaaatgagatcggcaaa
aacatgacggtttttgaattcggaaatgacattatagttgtggattgcggtctcgctttt
ccagatgatgaaatgttgggaatagaccttgtcattcccgacattacttatttattgaaa
aatcgggaaaaagtgagagcaattgttttaactcatggtcacgaagaccatattggggca
ttaccctatattttaaaacaacttaatgttcctgtgtatgggactcgtttgactattggt
ttagtagaatataagttaaaagagcagggtattttaaaagatagtaaattgataactgtg
aagccaagagagattgtcgaaattggtcagtttaaagtggagtttctaaggacctctcat
agcattgcagattctgctgctctggcgattcacactcctgtagggactgtatttcattcg
ggagactttaaaatagattttactcctataggaggagaaattgcagacttacaccgcttt
gcccagttaggggaaaaaggggtacttgtgatgttgtgcgatagtaccaatattgaaaga
cctggttataccatgtcagaaaggacagtaggagagacttttgacaatctattcagaaaa
gcggaacagcgaattatagttacgacttttgcttctaatatccacagagtgcaacaaatt
atagattctgctcacaagtatggaagaaaggttgctatttcaggcagaagcatgttaaat
gtagttaatgtagcgatggaattaggctatttaattgttcctgatggccttttgattgat
attgatgaagccaataaattgccccatgataaagttgccattataacgacaggcagccaa
ggggaacctatgtcagctcttaccagaatggcttcttctgagcataaaaaagtagagatt
gtaccgggagatacagtgataatttctgcttctgctattccgggaaatgaaaaacttatt
tctcgcgttatcaaccaattatttaaaaagggtgccaatgtaatttatgaagcattggca
gatattcacgtatcgggtcacgcttgtcaagaagagattaagctacttcatacattaata
aaacctaaatttttcattcctgttcatggggaatacagacatttagttcagcatgctaaa
cttgcagagactttgggaatgcctccccaaaatatctttatagtagataacgggacagtg
ttagagtttacaaaaaattctggaagaattgcaggaacagtaacagcagggaaagtgtta
gtagatggcttgggtgttggagacgtaggaaatattgttttaagagatagaaaacatttg
gctcaagatggtttgttagtagtagtggttactatttctaaagaaacgggaggaattata
gcgggtcccgacataatttccagaggatttgtatatgtgagagaatcagaggatttaatg
gaggaatccaaaaatgttgtcagagatgtgttatcaaagtgtaagaaagagggaattagc
gaatgggctactataaaatcaatgataaaagatgatttaagcagtttcttatatgaaaaa
actaagagaaatcctatgatattgccaatcataatggaaatttaa
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