Thiocapsa bogorovii: LT988_06505
Help
Entry
LT988_06505 CDS
T07840
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tbog
Thiocapsa bogorovii
Pathway
tbog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LT988_06505 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbog03019
]
LT988_06505 (rne)
03009 Ribosome biogenesis [BR:
tbog03009
]
LT988_06505 (rne)
Enzymes [BR:
tbog01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LT988_06505 (rne)
Messenger RNA biogenesis [BR:
tbog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LT988_06505 (rne)
Ribosome biogenesis [BR:
tbog03009
]
Prokaryotic type
rRNA processing factors
LT988_06505 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UHD17696
LinkDB
All DBs
Position
1455454..1458696
Genome browser
AA seq
1080 aa
AA seq
DB search
MKRMLINATQPEELRVATVDGQQLYNLDIESPGREQKKANIYKGIITRVEPSLEAAFVDY
GADRHGFLPLKEIARAYFEPDSVKAGSRVSIKESVREGREVVVQIDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGVSRRIEGQDRSELRDAMSQLEIPEDMGLIVRTAGVGKNVEE
LQWDLDYLLQLWKAIETSAQDRKAPFLIYQESDVIIRSIRDYLRVDIGEILIDNKAVFER
AESFIRQVMPSNLKKLKLYQDEVPLFTRYQIESQIESAFQREVRLPSGGSIVIDHTEALT
SVDINSARATKGADIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMTPPKNQREVE
NRLRDALKHDRARVQVARISRFGLLEMSRQRLRPSLGESSQQVCPRCKGQGTIRGVESLA
LSILRIVEEEAMKENTHRIVAQLPVSVATFLLNEKRRGILEIEQRQGVEVLLLPNEALET
PEYQIERVRAQDAGKLVPDQSSYELTALPETKAAPLYAKLGQPVQAEEPAVKQVSPATPA
PQRWTPTPQPETPVQQEVERGEPESLLKRIWTGLFAPRQPEAAAAAGRRPAAAEPIARET
APRTQPPRQSAHSGERRSQARPTQGRRDESSGERSRPDQGRSGRPAQDQQTRPEPSRGRG
EGTQTSEDTPAAGATRSENDEQAQARRSAETRSRRGGSRGRGRRGSGSSEAARLSGENPR
DQDSRGDEGPGEQNERRGEEATPRPEDRAATASRGTRPEDHPLMVTPVGNTPRPEPASQP
AAEQLAAEPGEAVRPSTESNDRRRPTERTEEPRLADQPERVDTASNEPADAGADQQRDGN
TTPAGERPRSSRRRRGGRNRRRSSAGAETKEGTGADSGSADGASEGQPASDPASDASQDH
QAAREGSIEPVSKPREHRSEPRVRHSTVPAQGDSTRVEPQAAGSGTDESMGNERSAPMKQ
ETPASEPSASSTHDTPAREATAPIAHEPPKNEPPAMMHRPEPVAEPVQSRTPTDRATAPD
AGHREAEGPHADSTSTSTDPDGRATQRPDPGASEPVTAPPTPAVQAPSPASDPSDPKGGA
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgatcaacgcaactcagcccgaagagttgcgtgttgcgaccgtcgac
ggtcaacagctctataacctcgatatcgaatcccccggccgagagcagaaaaaggccaac
atctacaaaggcatcatcacccgcgtcgagcccagtctcgaggcggcttttgtcgactac
ggtgccgatcggcacggcttcctccccctcaaagagatcgcccgggcttacttcgagccc
gacagcgtcaaagccggctcgcgcgtcagcatcaaggagtcggtgcgcgaaggccgcgag
gtcgtcgtccagatcgacaaagaagagcgcggcaacaaaggcgcggcgctcacgacattc
atctcgctggccggccgatatctggtcttgatgcccaacaacccgcgcgccggtggcgtg
tcgcgacgcatcgagggccaggaccgcagcgagctgcgcgatgccatgagtcagctcgag
atcccggaggacatgggcctgatcgtgcgcaccgcgggtgtgggcaagaatgtggaggag
ctccagtgggatctggactatctgctccagctctggaaggcgatcgagacctcggcgcag
gaccgcaaggcacccttcctcatctatcaagagagcgacgtcatcatccgctcgatccgc
gactatctgcgcgtggacatcggcgagatcctgatcgacaacaaggccgtcttcgagcgt
gccgagagcttcatccgccaggtgatgccgagcaatctgaagaagctcaagctctaccag
gacgaggtcccgctcttcacgcgctaccagatcgagagccagatcgagtcggccttccag
cgcgaggtgcgcctgccctcgggcggatcgatcgtgatcgaccacaccgaggcgctgacc
tcggtggacatcaactcggcgcgcgcgaccaagggcgcggacatcgaggaaaccgcgctc
aacaccaatttggaggccgccgacgagatcgcccgccagctgcgcctgcgcgacctcggc
gggctcttcgtcatcgacttcatcgacatgacgcctccgaagaaccagcgcgaggtcgag
aatcgtctgcgcgacgcgctcaaacacgaccgtgcaagggtgcaggttgcgcgcatttcc
cgcttcggtctgctggagatgtcgcgccagcgcctgcgcccctcgctcggggaatcaagc
cagcaggtctgcccgcgctgcaagggccagggaaccattcgcggggtcgaatcgctcgcg
ctctcgatcctgcgcatcgtcgaagaagaggcgatgaaggagaacacccaccgcatcgtc
gcccagctgccggtcagcgtcgcgaccttcctgctcaacgagaagcgccgcggcatcctc
gagatcgagcagcgccagggcgtcgaagtcctcttgctgcccaacgaagcattggaaacg
ccggagtatcagatcgagcgcgtccgcgcccaagacgcggggaaactcgttccggatcag
tcgagctacgagctgaccgcgctgcctgagaccaaggcggcgcccttgtacgccaaactc
ggtcagccggttcaggcggaggagccggcggtcaaacaggtctcgcccgcaacaccggcc
ccgcaacgctggacaccgacgccgcaacccgagacgccggtgcagcaggaagtggaacgc
ggcgagcccgaaagcctgctcaaacgcatttggaccggtctttttgcgccgcgccagccc
gaagcggcagccgccgcaggccgcaggcccgccgcggccgaacctatcgcacgggagacg
gcaccgcgcacgcagccgccgcgacagagcgcccattccggtgagcgtcgtagccaggcc
agaccgacgcagggacgccgcgacgaatcatcgggcgaacgcagccgcccggaccagggg
cgatccggtcgaccggcacaggatcagcagacacgacctgaaccgagtcgcggccgcggc
gaaggcactcaaaccagcgaggatacccctgcagcaggcgcgacgcgatccgagaacgac
gagcaagcgcaagcccgccgcagcgccgagacgcgctcgcgccgcggcggttcgcgcgga
cgcgggcgccgtggctccggttcaagcgaagccgcccgcttgagcggcgagaacccgcgc
gatcaagactcgcgcggcgacgagggacccggcgagcagaacgaacgccgtggcgaggag
gctacgccgaggcccgaggatcgcgcagccacggcgtcgcgcgggacacgaccggaggat
catccgctgatggtcacgccggtcggaaacaccccgcgacccgaaccggcatctcaaccc
gccgcggaacagcttgctgccgagccgggtgaagccgtgagaccatcgacggaatcaaac
gaccgccgacgcccgacggaacggaccgaggagccccgcctcgccgatcaacccgagcgg
gtggacaccgcgtcgaatgaacccgccgatgcgggagccgaccagcaacgggacggcaac
accacgccggccggcgagcggccgcgatcctcgcgccgacgccgcggcggccgcaaccgc
cgacgctcttcggccggcgcagaaaccaaagagggcaccggagccgattcgggcagcgcc
gacggcgcttcggaagggcaaccggcctcggacccagcgagcgacgcatcgcaggatcac
caggccgcacgcgaggggtccatcgagccggtctcgaaaccgcgcgagcaccgatccgag
ccaagggtccggcacagcacagtccccgcgcagggcgacagcactcgcgtggaaccacaa
gcggctggatcgggcaccgatgagtcgatggggaatgagcgtagcgcaccgatgaagcag
gagaccccggcgagcgagccgtccgcatcgagcacgcacgataccccggcaagagaggcg
actgcgccgattgcgcatgagccacccaagaacgagccgcccgccatgatgcaccgcccg
gagccggtcgccgagccggtccaatctcggacgccaaccgatcgcgcgaccgcccccgat
gccggccatcgcgaagccgaagggccccatgcggacagcaccagcacctcgacagacccc
gacggacgggcaacgcagaggcctgatcccggtgcttcggaaccggtcaccgcgccgccg
acacctgctgtccaagcgccctccccggcctccgacccgagcgatcccaaaggcggggcc
taa
DBGET
integrated database retrieval system
