Thiocapsa bogorovii: LT988_08245
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Entry
LT988_08245 CDS
T07840
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tbog
Thiocapsa bogorovii
Pathway
tbog03030
DNA replication
tbog03430
Mismatch repair
tbog03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tbog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LT988_08245 (dnaE)
03430 Mismatch repair
LT988_08245 (dnaE)
03440 Homologous recombination
LT988_08245 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tbog03032
]
LT988_08245 (dnaE)
03400 DNA repair and recombination proteins [BR:
tbog03400
]
LT988_08245 (dnaE)
Enzymes [BR:
tbog01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LT988_08245 (dnaE)
DNA replication proteins [BR:
tbog03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LT988_08245 (dnaE)
DNA repair and recombination proteins [BR:
tbog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LT988_08245 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
HROB
Motif
Other DBs
NCBI-ProteinID:
UHD18014
LinkDB
All DBs
Position
1806478..1810053
Genome browser
AA seq
1191 aa
AA seq
DB search
MDPSFVHLHLHSEYSLVDGLVRIKPLVKRVAALGMPAVAITDQCNFFALVRFYKAAVSAG
LKPIAGADLLVRNPEDVNKPHRLVLLVQDAIGYRNLTQLISRAYVEGQHLGVPYVERDWI
ASAAEGLIALSGGPQGDVAQLLLNGHREAAERRLAEWLAVFGDRYYLELVRTGREQEAEL
VETSVDLAIRLGVPVVATNDVCFLHPDDFEAHEVRVCIHEGRTLEDPRRPRRYSAEQSLR
SPAEMAELFADLPEALENSVEIAKRCNLELTLGENFLPDFPVPAGMTVDSYFAEASRVGL
EERLQRILDPEAADLADQRRLYCDRLDLELSVITQMGFPGYFLIVADFIQWAKAQGIPVG
PGRGSGAGSLVAYALKITDLDPIEHDLLFERFLNPERVSMPDFDVDFCMEGRDRVIDYVA
GKYGREAVSQIITFGTMAAKAVVRDVGRVMGHPYGFVDRVAKMVPFELGMTLEKALAESD
DLKAAYEDDEEIRALIDMARKLEGLTRNAGKHAGGVVIAPTKLTDFAPLYCEQGGENLVT
QFDKDDVEQVGLVKFDFLGLRTLTIIDWALKTVNALRREAGEPAIDIERIEPQDAEAFAL
LKRCETTAVFQLESRGMKELIKKLQPDSFGDITALVALFRPGPLQSGMVDDFINRKHGRA
EVAYPHPDLEPILKPTYGIILYQEQVMQIAQVLAGYSLGGADLLRRAMGKKKQSEMDKQR
TIFEEGAVARGVDRAVATYIFDLMDKFAGYGFNKSHSAAYALVSYQTLWLKTHYTAAFMA
AVLSADMDNTDKVVTLIEECRALRLRVEPPAVNRSAYRFTVADPRTVIYGMGAIKGVGEG
AIEAIIATRTAEGPFRDLWDFCRRIDLHKANRRVLEALVRAGALDELGPNRATLMAELPL
ALKLAEQHHATRAAGQADLFGALEPVASPEPDPQLASEVRADWEDEQRLAGEKETLGLYL
TGHPIDRYESELRAMAVSRIAKLLETDRELGRRDRRDREKRSVAGLVVSVRHSKTQRGRM
GSVVLDDRTGRIEITVFSELYEQLRHLLVPDQILQVSGALNFDEYRDSWSLRADDVRTFE
QARASMADHLRLILDLSDPAAHAEGLARLDALRVALAAFRDGDLPVRLRYCRPGAAGEMV
LGDAWRVEPTDALLKRLRQLLGSDAVNVVYERSPLPAAQTETQPPRLAAVG
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
gtggatcccagcttcgtccatctgcatctgcattccgagtattcgctggtcgacgggctg
gtgcggatcaagccgttggtgaaacgtgtcgccgcgctggggatgccggcggtcgccatc
acggatcagtgcaacttcttcgcgctggtgcgcttctacaaagccgcggtctcggccgga
ctcaagccgatcgcgggggccgacctcctggtgcgcaacccggaggacgtcaataagcca
caccgcctggtgctgctcgtccaggatgcgatcggctaccgcaatctcacgcagctcatc
tcccgggcgtacgtcgagggccagcatctcggggtgccttacgtggaacgcgactggatc
gcgtccgcggcggagggtctgatcgcgctctcgggcgggccgcaaggcgacgtcgcccaa
ctgctcctgaacggccatcgcgaagccgccgagcgtcggctcgcggagtggctcgcggtc
ttcggcgaccgctattacctggagctggtgcgcaccggacgcgagcaagaggccgagctg
gtcgagaccagtgtggatctggccatccgcttgggcgtgcccgtggtggcgaccaacgac
gtgtgtttcctccatcccgatgacttcgaggcccatgaggtgcgggtctgtatccacgag
gggcgcaccctggaagatccgcgccgtccgcgccgctacagcgccgagcagtcgctgcga
agccccgcggagatggccgagctcttcgccgatctgcccgaggcgctggagaactcggtc
gagatcgccaagcgctgcaaccttgagctgaccctcggcgagaacttcctcccggatttt
ccggtgccggccgggatgacggtggacagctatttcgccgaggcatcgcgggtcgggctc
gaggagcgcctgcagcggatcctcgacccggaggccgccgaccttgccgatcaacgtcga
ctctattgcgatcgactcgatctggagctgtccgtcatcacccagatgggcttccccggt
tacttcctgatcgtcgcggacttcatccagtgggccaaggcgcagggcatcccggtcggt
ccgggccgcggctcgggcgcgggctcgctggtcgcctatgcgctcaagatcacggatctg
gacccgatcgagcacgatctgctgttcgagcggttcctcaatccggaacgcgtctccatg
cccgacttcgacgtcgacttctgcatggaaggccgcgaccgggtcatcgactatgtcgca
gggaaatacgggcgcgaggccgtctcccagatcatcaccttcggcaccatggcagccaag
gcggtggtgcgcgatgtcgggcgcgttatgggtcacccctacggattcgtcgatcgggtt
gcgaagatggtgcccttcgagctggggatgaccctggagaaggcgctcgccgagagcgac
gatctgaaggccgcctacgaggacgacgaagagattcgggcactgatcgacatggcccgc
aagctcgaaggcctgacccgcaatgccggcaaacatgcaggcggcgtggtcatcgcgccg
accaagctcaccgacttcgctccgctctactgcgagcagggcggggagaacctggtcacc
cagttcgacaaggacgacgtagagcaggtcggactggtcaagttcgacttcttgggtctg
cgtaccctgacgatcatcgattgggcgctcaagacggtgaacgcgctgcgtcgcgaggcc
ggcgagccggcgatcgacatcgagcggatcgagccgcaggatgccgaggccttcgcgctc
ctgaagcgctgcgagaccacggcggtcttccagttggagtcgcgcggtatgaaggagctg
atcaagaagctccagcccgacagcttcggcgacatcaccgcgctggtggcgctctttcgc
ccaggcccgttgcagtcgggcatggtcgacgacttcatcaaccgcaagcacggacgcgcc
gaggtcgcctatccgcacccggatctggagcccatccttaaaccgacctacggcatcatc
ctctatcaagagcaggtgatgcagatcgcccaggtgctcgccggctattcgctcggcggc
gccgatctgctgcgcagggcgatgggcaagaagaagcagtcggagatggacaagcagcgc
accatcttcgaggaaggagcggtcgcgcgcggggtcgaccgagcggttgcgacctacata
tttgacttgatggataagtttgccggttacggattcaataaatcgcactcggccgcctac
gcgctggtcagctatcagaccctctggctgaagacgcattacacggcggccttcatggcc
gcagtgctgagtgcggacatggacaacaccgacaaggtggtgaccctgatcgaggagtgc
cgtgccctacgcctgcgggttgagccgccggcggtcaatcgctctgcctatcgcttcacc
gtcgccgatccgcgcaccgtcatctacggcatgggcgccatcaagggggtcggcgagggc
gcgatcgaggcgatcatcgcgacacgcacggccgagggcccgttccgcgatctgtgggac
ttctgtcgacggatcgatctgcacaaggccaaccgacgcgtcctcgaggccctggtgcgc
gccggtgcactcgacgagctcgggccgaaccgtgcaaccctgatggccgagctgcccttg
gcgctcaagctggccgagcagcaccatgcaacccgggcggccggtcaggccgatctcttc
ggtgcattggagcctgtcgcctcgcccgagcccgatccacaattagcgagcgaggtccgc
gccgactgggaagacgagcagcgcctggcgggcgagaaggagacgctcgggctctatctg
acgggacatccgatcgatcgctacgagtcggagcttcgggcgatggcggtcagccgtatc
gccaagctcttggagacggatcgcgagctgggccgtcgggaccggcgcgaccgcgagaaa
cgcagtgtcgccggcctggtcgtgtcggtgcgtcacagcaagacccagcgcgggcgcatg
ggctcggtggtgctcgacgatcgcacggggcgcatcgagatcactgtcttctccgagctc
tacgagcagttgcgtcatctcttggtgccggaccagatcctacaggtttcgggggcgctc
aatttcgacgagtaccgagacagctggtccttgcgtgccgacgacgtgcggaccttcgag
caggcgcgggcaagcatggccgatcatctgcgtctcatcctggacctctcggatccggct
gcccatgccgagggcctcgctcggctcgatgccttgcgcgtggcactcgcggcctttcgc
gacggcgatctcccggtccgtctgcgctattgccgccccggcgcagcgggcgagatggtc
ctcggagacgcttggcgagtcgagccgaccgacgccctgttgaaacgtctgcgacagctc
ctcggaagcgacgcggtgaacgtcgtctacgagcgctcgccgctgccggcagcgcagacc
gagacgcaacctccgcgtctggcggcggtcggctga
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