Thiocapsa bogorovii: LT988_11530
Help
Entry
LT988_11530 CDS
T07840
Symbol
nifA
Name
(GenBank) nif-specific transcriptional activator NifA
KO
K02584
Nif-specific regulatory protein
Organism
tbog
Thiocapsa bogorovii
Pathway
tbog02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
tbog00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LT988_11530 (nifA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tbog03000
]
LT988_11530 (nifA)
Transcription factors [BR:
tbog03000
]
Prokaryotic type
Helix-turn-helix
Other families
LT988_11530 (nifA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
HTH_8
GAF_2
AAA_5
AAA
GAF_3
AAA_2
Mg_chelatase
AAA_16
AAA_3
HTH_23
nSTAND3
Parvo_NS1
T6PP_C
Motif
Other DBs
NCBI-ProteinID:
UHD18615
LinkDB
All DBs
Position
2541142..2542722
Genome browser
AA seq
526 aa
AA seq
DB search
MNADFPVPGSAEQACRLDLLESQLSALFEVSSVLSRSLDLRQTLREVLGVLHERGRLRHG
MVSLLSEDRGELLISALHTDDQNAADRIAYRPGEGIIGSILSRNRPWILPRIGDEPRFLD
RLSLYDPDLPFIGVPIRLGEGGAIGVFAAQPPFADGLLEERARFLEMVANLIGQAVRLAR
TVEAEQQALREERDKLRREVKGTHGFDSIIGHTDAMRLVFDQVRQVAKWNTTVLIRGESG
TGKELIADAIHYNSPRARAAFVKLNCAALPDNLLESELFGHEKGAFTGAISQRKGRFEQA
DGGTLFLDEIGEITPAFQAKLLRVLQEGEFERVGGGRTLKVDVRVIAATNRDLEAEVRAG
DFREDLYYRLNVMPIRMPALRERIEDIPDLARFLVEKVSRMQGRELSITDSALRILMRHD
WPGNVRELENCMERAAVMSEQGIIDRDVIELTGLNVAALASEPLPSTPAKTSTIDFNDPD
IDERERVIAALEEAGWVQAKAARLLNMTPRQIAYRIQTLNIKMRQF
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccgacttccccgtccccggcagcgccgagcaggcctgccggttggatctgctc
gaatcccaactcagcgcactgttcgaggtgagctcggtgctcagccgttccctcgatctg
cgccagaccctgcgcgaggtgctcggcgtgctgcacgagcgcggccgccttcgacacggg
atggtcagtctcctgagcgaggatcgcggcgagctcttgatcagcgcgctccataccgac
gaccagaacgccgcagaccgcatcgcctatcggcccggcgagggcatcatcggcagcatc
ctctcgcgtaatcgtccctggatcctgccgcgcatcggcgacgagccccgcttcctcgat
cgactcagcctctatgacccggacctccccttcatcggcgtaccgatccgactcggcgaa
ggaggtgcgatcggtgtcttcgcggcgcagccccccttcgccgacggactgctcgaggaa
cgggcgcgctttctggagatggtcgccaatctgatcggccaggcggtccgtctcgcccgg
accgtcgaggccgagcagcaagccttgcgcgaggagcgcgacaagctccgtcgcgaggtc
aaaggcacccacggcttcgacagcatcatcggccatacggacgccatgcgcctggtcttc
gatcaggtgcgccaagtcgcgaaatggaacaccaccgtcctgatacggggcgaatcaggc
accggcaaggagttgatcgccgacgccatccattacaactcgccacgcgcacgcgccgcc
ttcgtcaaactcaactgcgccgccctgccggacaatctgctggaatccgagctcttcggc
cacgagaagggcgccttcaccggcgcgatcagccagcgcaagggccgtttcgaacaagcc
gacggcggcacgctctttctcgacgagatcggcgagatcaccccggcctttcaggccaag
ttgctgcgcgtcttgcaggaaggcgagttcgagcgggtcggcggcgggcgcacgctcaag
gtggacgtgcgggtcatcgccgccaccaatcgcgacctcgaggccgaggtgcgggccggc
gacttccgcgaggatctttactaccgcttgaacgtcatgccgattcgcatgcccgctctt
cgcgagcgcatcgaggacatccccgacctcgcccgctttctcgtggaaaaggtctcgcgc
atgcagggacgcgagctctcgattaccgacagtgcactgcgcatcctgatgcgtcacgac
tggcccggcaatgtccgcgagctcgagaactgcatggagcgcgccgcggtcatgagcgag
caggggatcatcgaccgcgacgtgatcgagctgacgggcttgaacgtggctgcgctcgcg
agcgagccgcttccgagcacgcccgcgaagacctccacgatcgatttcaacgaccccgat
atcgacgagcgcgagcgcgtcatcgccgcgctggaagaggccggctgggtccaggccaag
gccgcgcgactgctcaacatgacaccgcgccagatcgcctaccggattcagacgctgaac
atcaagatgcggcagttttag
DBGET
integrated database retrieval system
