Thiocapsa bogorovii: LT988_13540
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Entry
LT988_13540 CDS
T07840
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tbog
Thiocapsa bogorovii
Pathway
tbog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LT988_13540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbog03019
]
LT988_13540
03400 DNA repair and recombination proteins [BR:
tbog03400
]
LT988_13540
Enzymes [BR:
tbog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LT988_13540
Messenger RNA biogenesis [BR:
tbog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LT988_13540
DNA repair and recombination proteins [BR:
tbog03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LT988_13540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
AAA_19
Helicase_C
UvrD_C
UvrD_C_2
Viral_helicase1
AAA_22
AAA_30
ResIII
Motif
Other DBs
NCBI-ProteinID:
UHD14327
LinkDB
All DBs
Position
complement(2982941..2988406)
Genome browser
AA seq
1821 aa
AA seq
DB search
MPHHAPTTEPPPTSGIDSLIERSLLLDLETGPDGAIHKIGAIRQGREFRRQGRFDPARAL
DDLVQFAGDASFVIGHNLLGHDLPTLRARAPSLDLLGRRIIDTLYLSPLAFPAHPYHRLV
KDYKLVRDSIADPVQDCRLAEQVLREQFEELARRCTIGIADETSPINSGTSPAEAVARTS
AGWTSAAQSTNASAGEDLGGLRSRSSTLPASVTNTSAGEGGKGERDLIRVFQFCFRGATL
LEANATGGDGLAAIFRLLSGDLPSVTEVRETLLTRWRDRACSSAAPCLILDHLANPDRRP
VLAYAAAWLQVAGGSSVLPRWVRHRFPATVTLLKALRDTPCEDPGCPWCREVHDPRAQLE
RWFGFDAFRAEPQAQDGGSLQERVVRDGIADRSLLAILPTGGGKSLCFQLPALVRAHRRG
TLSVVVSPLQALMKDQVDNLVTKTGATSAAAIYGLLTPPERGDVMERVRLGDIALLYISP
EQLRNRSVADMLASREIGCWIFDEAHCLSKWGHDFRPDYLYAGRFIRTLAERQDVPIPPV
ACFTATAKRDVKTEILAYFREELGLDLVDYAGGVERDNLEFVVQVVGKHEKDARIHAILT
EHLGAPRSSEDPDPTGGAAVVYASTRKGTETLAERLSRQGWAVEAFHAGVDKPEKKRIQE
AFVTGELQVICATNAFGMGVDKEDVRLVVHADIPGSLESYIQEAGRAGRDRKPAACVLLY
DEQDIERQFRMESFSELSRRDIAEILRGVRRAKRDRDGIVVVTSGELLRDEDLRLGFDPE
TSDADTRVRIAIAWLERAGLVERNENRTFVFQGRPAVASLEDAERKIRGLGLSAAQGRRW
LAILEAMLNTEPDEAFTADELARLPAFVRAADGQAGAPDSVSAPVPSWDRGDTPSQRVLR
TLHDMAGAGLLRDGPQLTAFVSHKVKNHSALVLTRVARLERAMLDALREQDPDAQTGVWL
PLSLRRLNQHLLDQGHDSNPETLRNLLKGLTLDGRGLAGARGSLDLHQTDRDHYRLRLHR
DWRTLYRTAERRRAVADRILKTLLAKLPDDAPASGELLVAFGTDELTRALHGDLALSAEL
RDPLAAAERGLLFLHEHGVIILQGGFAVFRSAMTLRLLPQAKGRRYSEAQYQPLAQHYRE
RVFQIHVMNEYARLGAEKIRQALSLVTGYFTLGKEAFVKRWLADRREQLLRATTAESFCR
IVDDLGNPEQIEIVAAPEDGNRLVLAGPGSGKTRVIVHRCAYLLRVLRVPAHRILVLCFN
RGAALELRRRLAQLVGDDARGVTVQTYHGFAMRLTGRSYAERLAAATDAAPDFDGLIAEA
VDLLEGRVDLPGIGPDTARERLLAGYRHILVDEYQDIDTDQYRLVAAIAGRNQDEEKLTL
IAVGDDDQSIYAFRGANLDCIRRFKEDYAAELHHLVENYRSTGHIVAAANALIVHNRERM
KRDHPIRVDRGRATRAAGGRWQDLDGHAKGRVLVLQVADPARQAAALVARIEELRRLGGH
DWSDFAVLARRHSILEPVRALCEHRDIPVDWPGDLPPLHRVREIDTFLSNLARHAREPLS
ARALSDWLPERPSPWRSVLQRLIGDWQAEAGTTEVPAVEIAEFCYETLAEQRRERRLGEG
LLLTTLHGAKGLEFPHVLVADGAWDPDPHNEEERRLFYVGMTRAKETLTLMAIAGSRHPY
LAEIEGDWLVKVEPFVDPPPAEVIGRRYTRLSPADLDLGYAGRMSPDAAIHAHLAALGPG
DELRWEQVGQDTLLLDQAGHRIARLSKRAAARWLPDIDRIERIRVHALIRRDSRQNTPEH
AQHCRSERWEVPLVEIRWRGS
NT seq
5466 nt
NT seq
+upstream
nt +downstream
nt
gtgccccatcacgccccgacaaccgagccgccaccgacatccggcatcgattcgctcatc
gagcgctcgctcctgctcgacctggagaccgggccggacggcgccatccacaagatcggg
gcgatcagacaggggcgcgaattccgtcgccaagggagattcgatccggcacgtgcactc
gatgacctggtgcagttcgcaggcgatgcgagcttcgtgatcggtcacaacctgctcgga
cacgatctgccgacactgcgggcccgagcgccgagcctggacctgctcggacggcgcatc
atcgacacactctatctgtccccattggcctttccggcgcacccctatcaccggctggtc
aaagactacaagctggtgcgcgacagcatcgccgacccggttcaggactgccgcctggcc
gagcaagtcttacgcgaacagttcgaagagctggcccggcgctgcaccatcgggattgcc
gacgagacctcgcccatcaactcgggcacgtcgccggccgaggctgtagcgcggacaagc
gccgggtggacaagcgcagcgcagtccaccaacgccagcgccggtgaagacctcggtgga
cttcgctcgcgctcgtccaccctaccggccagcgtcacgaatacctccgcgggcgagggc
ggaaaaggcgagcgcgacctgatccgggtcttccagttctgtttccgcggcgcgaccctg
ctggaagccaacgccacgggcggggacggactggccgcaatctttcggttgctctcgggc
gacctgccgagcgtcaccgaggtgcgcgagaccctgctgacccgctggcgggaccgtgcc
tgctcgagcgccgccccgtgcctgatcctggatcatctggcgaatcccgaccgccgcccg
gtcctcgcctatgccgcggcctggcttcaggtggccggcggtagctcggtgcttccgcgc
tgggtgcggcatcgcttcccggcgacggtcacgctgctcaaggccctgcgggacaccccc
tgcgaggacccgggctgcccctggtgccgcgaggtgcacgacccgcgggcgcagctcgaa
cgctggttcggcttcgacgccttccgcgccgagccgcaggcgcaggacggcgggagcctg
caggagcgcgtcgtccgggacggcatcgcggatcgctcgctgctcgcgatcctcccgacc
ggcggcggcaaatcgctgtgttttcagttgccggccctggtacgcgcgcatcgacgcggc
acgctgagcgtcgtcgtctcgcccttgcaggcattgatgaaggaccaagtcgacaatctg
gtaacgaagaccggcgcaaccagtgcggcggccatctacggcctcttgaccccgccggag
cgcggcgacgtgatggagcgtgttcgcctcggcgatattgccttgctctacatctcaccg
gagcagctgcgcaaccgatcggtggcggacatgctggccagccgcgagatcggctgctgg
atcttcgacgaggcccactgtctgtcgaaatggggccacgacttccgccccgattatctc
tatgccgggcgtttcattcgcacgctggccgagcgccaagacgtgccgatcccgcccgtg
gcctgcttcacggccacggccaagcgggacgtgaaaaccgagatcctggcctattttcgc
gaggagctgggtctcgatctggtcgattacgcgggcggcgtcgagcgtgacaacctcgaa
ttcgtggtccaggtcgtcggtaagcacgagaaggacgcccggatccacgccatcctgacc
gagcacctcggcgcgccgagatccagcgaggatccagacccgaccggcggtgcggcggtg
gtctacgcctcgacgcgcaaagggaccgagaccctggccgagcgcctgagccgccaaggc
tgggcggtcgaggccttccacgccggcgtcgacaagccggagaagaagcgcatccaggag
gccttcgtgaccggcgagctgcaggtgatctgcgccaccaatgccttcgggatgggcgtg
gacaaggaggacgtgcgcctggtcgtgcacgccgacatccccggctcgctcgagagctac
atccaagaggccgggcgcgccgggcgcgatcgcaaacccgcggcctgtgttctgctctac
gacgaacaggacatcgagcggcagtttcgcatggaatccttctccgagctgtcgcgccgc
gacatcgccgagatcctgcgcggtgtgcgccgggccaagcgcgaccgcgacggcatcgta
gtggtcaccagcggcgagctgttgcgcgacgaggatctccggctgggcttcgatcccgag
acgagcgacgccgacacccgggtacgcatcgccatcgcctggctggaacgtgccggcctg
gtcgaacgcaacgagaaccgcaccttcgtcttccaaggccgccccgcggtggcgagcctg
gaggatgccgagcggaagatccgcggactgggcctctcggccgcccagggtcggcgctgg
ctggcgatcctggaggcgatgctcaacaccgagccggacgaggccttcaccgccgatgag
ctggctcgcctgccggccttcgtccgcgccgcggacggtcaggccggtgcgccagattca
gtctcggcgccggtcccgtcctgggatcgtggcgacaccccgtcgcagcgcgttctgcgg
acgcttcacgacatggcaggcgccggcctcctgcgcgacggtcctcagctcaccgccttc
gtcagccacaaggtcaagaaccattcggccttggtcctcacgcgtgtggcacgtctggag
cgcgcgatgctggatgccttgcgcgagcaggaccctgacgcgcagaccggcgtctggctg
ccgctctcgctacggcgtctcaaccagcatctcctcgatcagggccacgacagcaacccc
gagaccctgcgcaacctgctcaagggcctgaccctggacggtcgcggcctggccggcgcc
cgcggcagcctggatctgcaccagaccgaccgtgaccattaccgcctgcgcctgcatcgc
gattggcggaccctgtaccgcaccgccgagcgccgtcgcgccgtggccgaccgaatcctc
aagaccctgctggccaagctcccggacgacgctcccgcctccggcgagctgctggtggcc
ttcggcaccgacgagctcacccgcgcgctgcacggcgatctggccttgtccgccgagctg
cgcgacccgctcgcggccgcagagcgcggcctgctgttcctacacgagcacggcgtcatc
atcctgcaaggcggattcgcggtattccgctcggccatgacactgcgcctgctcccgcag
gccaagggacgacgctacagcgaggcccaatatcagccgctggctcagcattatcgcgag
cgggtgttccagatccatgtcatgaacgaatacgccaggctgggcgcggagaagatccgc
caggccctgagcctggtcaccggctatttcacgctcggcaaggaggccttcgtcaagcgc
tggctcgccgaccgccgcgagcagctcctgcgggcgacgaccgccgagtccttctgtcgg
atcgtcgatgatctgggcaaccccgagcagatcgagatcgtcgccgcccccgaggacggc
aaccgtctggtgctggccggacccggctcgggcaagacccgcgtcatcgtccaccggtgc
gcctatctgctgcgggtgctgcgggtgccggcgcatcgcatcctggtcctctgcttcaac
cgcggcgcggcgctggagctgcgccgccggctcgcgcagctggtcggggacgacgcccgc
ggcgtcacggtacagacctaccacggctttgcgatgcgcctgacggggcgctcctacgcc
gagcgtctcgcggcggccaccgatgccgcgcccgacttcgacggtctcatcgccgaggcc
gtggacctactcgagggccgcgtggacctgcccggcatcgggcccgacacggcgcgcgaa
cgcctcctcgccggttatcggcacatcctggtcgacgaatatcaggacatcgacacggat
cagtaccggctggtggcggccatcgccggacggaaccaagacgaggagaaactgaccctg
atcgccgtcggggacgacgatcagagcatctacgccttccgcggcgcgaacctcgactgc
atccgccgtttcaaagaggactacgccgccgagctgcatcatctggtcgagaattaccgc
tcgaccggccacatcgtcgccgccgcgaacgcattgatcgtgcacaaccgcgaacggatg
aagcgcgaccatccgatccgggtcgatcggggtcgcgccacgcgggccgccggcgggcgt
tggcaggacctcgacggccatgcaaagggacgtgtgctggtgctccaagtggccgatccg
gcgcgccaggccgccgcgctggtcgcacgcatcgaggagcttcggcgcctcggcggtcac
gactggtcggacttcgccgtcctcgctcgtcgccattccatcttggagccggtccgtgcg
ctctgcgagcacagagacatcccggtcgactggcccggcgacctaccgcccctgcaccgg
gtccgcgagatcgacaccttcctgagcaatctggcacgccatgcacgcgagcccctgagc
gcccgggcactctcggactggctcccggagcgcccgagcccttggcgctccgtcctgcaa
cgcctgatcggggattggcaggccgaggcgggtacgaccgaggttcccgccgtcgagatc
gccgagttttgctacgagaccctcgccgagcagcgccgcgagcgccggctcggcgagggt
ctgctgctgaccacgctgcacggcgcaaaggggctcgagtttcctcatgtcctcgtcgcc
gacggcgcatgggatccggatccgcacaacgaggaggagcgccgcctcttctatgtcggc
atgacacgggcaaaggagaccctgacgctgatggcgatcgccggcagccgccacccgtac
ctggccgagatcgagggcgattggctggtcaaggtcgagcctttcgtggatcccccgccc
gcggaggtcatcgggcgtcgctacacgcgcctgtcaccggcggacctggatctcggctat
gccgggcggatgtccccggatgcggcgatccacgctcatctggccgcactcggcccgggc
gacgagctgcgttgggagcaggtcggccaggacacgcttctgctcgaccaagccggccat
cgcatcgcccgcctgtctaaacgcgcggcggcccgttggctccccgacatcgatcgcatc
gagcggatccgcgtccatgcgctgatccgccgcgacagccgacaaaacacgcccgagcat
gcgcagcactgccgctcggagcgctgggaggtgccgctggtggagattcgctggcgcggg
tcttga
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