Thiocapsa bogorovii: LT988_17040
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Entry
LT988_17040 CDS
T07840
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
tbog
Thiocapsa bogorovii
Pathway
tbog03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tbog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LT988_17040 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tbog03400
]
LT988_17040 (uvrA)
DNA repair and recombination proteins [BR:
tbog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LT988_17040 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LT988_17040 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
AAA_29
SMC_N
nSTAND1
AAA_16
AAA_21
AAA_22
AAA_33
nSTAND3
AAA_18
NACHT
AAA_25
UvrA_DNA-bind
RsgA_GTPase
Viral_helicase1
AAA_23
ATPase
MeaB
DUF4350
DnaJ_CXXCXGXG
DUF3667
Motif
Other DBs
NCBI-ProteinID:
UHD14975
LinkDB
All DBs
Position
complement(3811702..3817296)
Genome browser
AA seq
1864 aa
AA seq
DB search
MIRLRGVRQNNLKDIDLDLPLGELIVVTGVSGSGKSSLAFDTLYAEGQRRYVETFSPYAR
QFLDRMDRPAADRIEGIPPAIAIDQTNPVRTSRSTVGTMTELNDHLKLLFARTARLFCRG
CGREVRRDTPEGIWEHLITLPEAADRNVSIAFAVPVPESLDVEAVKILLAQQGYVRILSE
DATAIEVIQDRLRLSAEQRGRAIEAIETALARGHGRIRVYPLDANRQPGPPWRFSADLHC
ADCDIAYADPTPSRFSFNSPVGACPTCRGFGRTIGIDWSLVVPDPSKSLLEGAIKPIQSD
SYSEVQEDLMGFAHRRGIPTDLPWRDLTDDDRAWVIEGEGEWEAGVWYGLRRFFAWLEGR
SYKMHVRVLLSRYRAYDVCTACDGARLTDEALDWRVGDRTLADRALPPERRFRHGRIGME
EAPWQALPGLCIHDLMRLPLNACRDFCDALPLDPALDLLIEGIRSRLRYLCEVGLGYLTL
DRQSRTLSGGEVQRINLTTALGSTLVNALFVLDEPSIGLHPRDMDRVVSILRRLRDQGNS
LVVVEHDPQVMRAADRIIDIGPGPGQQGGRILFEGPPADLIRTPGSLTGDYLAGRRQVAA
GHPPDPPAPNGPRIRIRGAQAHNLKGVDVEIPLHRLVVVTGISGSGKSTLVQEVLYNALC
QRKGHPDEPPGAHAGIDGDHLIADVVLLDQSSIGRTSRSNPASYVGALDVLRKRFAALPL
AKERGYTAGTFSFNSGTGRCPTCGGNGYEHLEMQFLADVYLRCPDCNGRRYRAPVLEVEI
GARPGAPGRSIADVLEMTATEALAFLHEDTDLKRALEPLLAVGLGYLRLGQPVPTLSGGE
AQRLKLAGHLAKSGRSKARDGGLLFLLDEPTTGLHFADVAVLLNAFRRLLDKGHSLLVIE
HNLDLIGAADWLIDLGPEGGEAGGELVCKGTPEQVAAHPTSHTGRALAEHLRDLSRAGTP
ETAIAEAPPRFMTSAGNAVIADNGLISVIHAREHNLKDLSLTIARDRFTVITGVSGSGKS
TLAFDILFAEGQRRFLESLNAYARQFVQPAARPDVDAVLGIPPTVAIEQRTSRGGAKSTV
GTLTEIHHYLRLLYVRLGLQTCPTCAVPIEPMSRDAILERIQRDHAGQQVALMAPLVVAR
KGIYKELAEWAARHGWFVLRVDGEPVETREWPRLDRYREHSIDLPVGEIAIRPDHEDALR
TLLDQALDLGKGALRVVAVADGTWGAETPYSTRRACPSCGIALPEPDPRLFSFNSKQGWC
GDCFGTGLALRGFDAEQSGEEDQWQEDDAIESTPCPSCHGARLNPQALAVRFRERSIADL
SALTVEQAGDFVADLHLDHRESTIAHDLLAEVRERLAFLAEVGLGYLTLDRAAPTLSGGE
AQRIRLAAQLGSNLRGVCYILDEPTIGLHPRDNRLLLNGLDRLQTKGNTILVVEHDEETI
RRADEVIDLGPGAGTRGGEIIARGTALELMQDPASVTGRCLARPRERSRPARATGKGDDW
LLISGARRHNLQDIEVCVPLARLVCITGVSGSGKSTLVREVLVKSLRNLLAQEGKTGARP
GKGTLVGCKRLIGWQGLARVLEVDQTPIGKTPRSCPATYVGFWDPIRRLFAATSEARILG
WSPARFSFNTSGGRCSACEGQGVQKLEMSFLPDVRMTCEVCGGSRFDRETREVRYQGLDI
GQVLRLSVDEAVDVFSAHRAIHHPLALLRDVGLGYLQLGQPSPTLSGGEAQRIKLVTELT
KARSTPTRGQESGPASIKTQRTARPTLYVLDEPTVGLHMADVERLLSVLHRLVDAGHSVL
VIEHNLDLMAEADWIIDLGPEAGDAGGRIVAEGTPETIAAAGELPTACALREHLRSTDQT
GSAQ
NT seq
5595 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctgcgcggggtgcgccagaacaacctcaaagacatcgatctggacctgccg
ctcggcgagttgatcgtcgtgaccggcgtctcgggctccggcaagtcgtcgctcgccttc
gacacactctatgccgaggggcagcgacgctatgtcgagaccttctcgccctacgcgcgt
cagtttctcgatcggatggaccgccctgcggccgaccggatcgagggcatcccgcccgcg
atcgcgatcgatcagaccaacccggtgcgcacctcgcgctccaccgtcggcaccatgacg
gagctgaacgatcacctgaagctcctgttcgcccgcaccgcccggctcttctgtcggggc
tgcggccgcgaggtccggcgcgatacgcccgaggggatctgggagcacctgatcaccctg
ccagaggccgccgaccgaaacgtctcgatcgccttcgccgttccggtgcccgaatcgctc
gacgtcgaggcggtcaagatcctgctcgcccaacagggctatgtccggatcctgtcggag
gacgcgaccgccatcgaggtgattcaagaccggctgcgtctgagcgccgagcagcgcgga
cgcgcgatcgaggccatcgagaccgcgctggcccgcggtcacggacgcatccgggtctat
ccgctcgatgcgaaccgtcaacccggcccgccctggcgcttctcggccgatctgcattgc
gccgactgcgacatcgcctatgcggacccgacgccgagccgcttctccttcaactcgccc
gtcggcgcctgcccgacctgtcggggtttcgggcgcaccatcgggatcgactggtcgctg
gtcgtgccggatccgtcgaaatcgttgctcgaaggcgcgatcaagcccatccagtccgac
agttattcggaggtccaagaagacctgatgggcttcgcgcaccgccgcggcatcccgacc
gatctgccttggcgcgacctcaccgacgacgatcgggcctgggtcatcgagggcgaaggc
gagtgggaggccggtgtctggtacgggttgcgacgcttcttcgcctggctcgaagggcgc
agctacaagatgcatgtgcgcgtgctgctctcgcgctaccgcgcctacgatgtctgcacc
gcctgcgacggggccagactgaccgacgaggcgctggattggcgcgtgggggacaggacg
cttgcggatcgggcgctgccgcccgagcgccgcttccggcacgggcgaatcggcatggag
gaggcgccctggcaggcgctacccggactctgcatccatgatctgatgcgcttgcccttg
aacgcctgccgtgacttttgcgacgccctgccgctggatccggcgctggatctgctaatc
gagggcatccgctcgcgcctacgctatctctgcgaggtcgggctcggctacctcacactg
gatcgccagtcgcgcaccctctcgggcggcgaggtgcaacgcatcaacctgaccacggca
ctcggcagcacgctggtcaacgcactcttcgtgctggacgagcccagcatcggcctgcat
ccgcgcgacatggaccgggtcgtctccatcctgcgacggctgcgcgaccagggcaattcg
ctggtggtggtcgagcacgatccgcaggtgatgcgggcggcggatcggatcatcgacatc
ggtcccgggcccggccaacagggcggacgcatcctcttcgaggggccgccggcggacctg
atccggacgcccggctcgctcaccggcgactatctggcgggacggcgacaggtcgccgct
ggccatccgcccgatcccccggcccccaacgggccgcgcatccgcatccgcggcgcacag
gctcacaacctcaaaggggtcgatgtcgagatcccgcttcaccgtttggtggtcgtcacg
ggcatctcgggatccggcaagtcaaccctggtacaggaggttctctacaacgcactctgc
cagcgcaagggccaccccgacgagccgccgggcgcgcacgccgggatcgacggggatcac
ctgatcgccgatgtcgtgttgctcgatcaatcgagcatcggacgcacctcgcgctcgaac
ccggcaagctatgtcggcgcgctcgacgtgctgcgcaagcgcttcgccgcgctgccgctt
gccaaggagcgcggctacaccgccggcaccttcagcttcaacagcggcaccggacgctgt
ccgacctgcggcggcaacggctacgagcatctggagatgcaattcctcgccgatgtctat
ctgcgctgtcccgactgcaacggccggcgctaccgcgcacccgtgctggaagtcgagatc
ggcgcccgacccggcgcgcccggacgttcgatcgccgatgtcctggagatgacggcgacc
gaggcactggcctttctccacgaggataccgacctgaaacgcgcgctggagcccttgctc
gcggtcggactcggctatcttcgcctcggccagccggtgccgacgctctcgggcggcgag
gcccagcgtctgaagctagccggccatctggccaagtccggtcgcagcaaggcgcgcgac
ggcggcctgctgttcctgctcgacgaacccacgacggggctgcactttgccgatgtcgcg
gtcctgctgaacgccttccggcgactgctcgacaagggccattcgctgctcgtgatcgag
cacaatctcgacctgatcggtgcggccgactggctgatcgacctcggccccgagggcggc
gaggccggcggcgaactggtctgcaagggcacacccgagcaggtcgccgcgcatccgacg
agccacaccgggcgcgccctggccgagcatttgcgcgacctgtcgcgcgcgggaacaccg
gaaaccgcgatcgcggaggccccgccgcgcttcatgacgagcgccggcaacgccgtaatt
gccgacaacgggctcatctcggtcatccacgcccgcgagcacaacctcaaggatctgtcc
ctcacgatcgcgcgcgaccgcttcaccgtcatcaccggggtctcgggcagcggcaaaagc
acgctcgccttcgatatcctctttgccgagggccagcggcgctttctggagtcgctcaac
gcctacgcccggcagttcgtccagcccgccgcgcgccccgatgtcgatgccgtgctcggc
atcccgcccaccgtcgccatcgagcagcgcaccagccgcggcggggccaagagcacggtc
ggcacgctcaccgagatccaccactatctgcgtctgctctacgttcggctcgggcttcag
acctgccccacctgcgcggtccccatcgaacccatgagccgggatgccatcctggaacgg
attcagcgcgatcacgcgggccaacaggtcgccctcatggctcccttggtcgtcgcccgc
aaaggcatctacaaggaattggccgagtgggccgcgcggcacggctggttcgtgctccgg
gtcgacggcgagccggtcgagacccgcgaatggccccggctcgaccgctatcgcgagcac
agcatcgacctgccggtcggggagatcgccatccggcccgatcacgaagacgcgttgcgc
accctgctggaccaggccctggatctcggcaagggcgcgctccgtgtcgtggcggtcgcc
gacggcacatggggcgcggagacgccctactcgacccgacgcgcctgcccgagctgcggg
atcgccctgcccgagccggacccgcggctgttcagcttcaactccaagcaaggctggtgc
ggcgactgtttcggaaccggactggcgctacgcggtttcgacgcggagcagtcgggcgaa
gaggaccagtggcaggaggacgacgccatcgaatcgaccccctgcccgagctgtcacggc
gcgcgcctcaacccgcaggcactcgccgtgcgctttcgcgagcgctcgatcgccgatctc
tcggccctgaccgtggaacaggccggggacttcgtcgccgatctccatctcgatcaccgc
gagagcaccatcgcccacgacctactcgccgaggtgcgcgaacggctcgccttcctcgcc
gaggtcggactcggctatctcacgctggaccgggccgcgcccacgctctccggcggcgag
gcccagcgcatccggctcgccgcgcagctcggctccaatctgcgcggtgtctgctacatc
ctcgacgagccgaccatcggcctacatccgcgcgacaaccgcttgctccttaacgggctc
gaccgactccagaccaagggcaataccatcctggtggtcgagcacgacgaggaaaccatc
cgccgcgccgacgaggtcatcgatctcgggccgggcgccggcacgcgcggcggcgagatc
atcgcccgcggtaccgcgctggagctgatgcaggatccggcctccgtcaccgggcgctgt
ctcgcacgcccgcgcgaacgctcgcgaccggcccgtgcgaccggcaagggcgacgactgg
ctcctgatctcgggtgcccgccggcacaaccttcaggacatcgaggtgtgcgtcccgctc
gcccggctggtctgcattacgggcgtctcgggctcgggcaagtcgacactggtgcgcgag
gtcctggtcaagagcctgcgcaatctgctcgcgcaggagggcaagaccggagcgcgaccc
ggcaagggcaccttggtcggctgcaaacgcctgatcggttggcagggcctcgcccgcgtc
ctggaggtcgaccagaccccgatcggcaaaacgccccgctcctgccccgccacctacgtc
ggtttctgggacccgatccgccgtctcttcgccgccacgtcggaagcccgcatcctcggc
tggagcccggcacgcttctccttcaacaccagcggcgggcgttgcagcgcctgcgaagga
cagggggttcagaagctcgagatgagcttcctgccggatgtccgcatgacctgcgaggtc
tgcggcggtagccgtttcgaccgcgagacccgcgaggtccgctaccaaggactcgatatc
gggcaggtcttgcgcctaagcgtcgacgaggccgtggatgtcttcagcgcccaccgcgcc
atccaccacccgctcgccctgctccgagatgtcggactcggctatctgcaactcggccag
ccgagccccacactctcgggcggcgaggcccaacgcatcaaactcgtcaccgagctgacc
aaggcccggtcgacgcctacgcggggacaggagtccggccccgcctcgatcaagacccag
cgtaccgcccgccccacactctacgtcctcgacgagccgaccgtcggactgcacatggcc
gacgtcgagcgcctgctcagcgtcctgcaccgactggtcgacgccggccattcggtcctg
gtcatcgagcacaacctcgacctcatggccgaggccgactggatcatcgacctcggcccc
gaagccggcgacgcgggcggccggatcgtcgcggaagggacacccgagacgattgcagcc
gccggcgaattgccgaccgcctgcgcgttgcgggagcatctccgaagcacagatcagacg
ggctcggcacagtag
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