Thiocapsa bogorovii: LT988_18080
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Entry
LT988_18080 CDS
T07840
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
tbog
Thiocapsa bogorovii
Pathway
tbog03030
DNA replication
tbog03430
Mismatch repair
tbog03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tbog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LT988_18080
03430 Mismatch repair
LT988_18080
03440 Homologous recombination
LT988_18080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tbog03032
]
LT988_18080
03400 DNA repair and recombination proteins [BR:
tbog03400
]
LT988_18080
Enzymes [BR:
tbog01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LT988_18080
DNA replication proteins [BR:
tbog03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LT988_18080
DNA repair and recombination proteins [BR:
tbog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LT988_18080
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_T
HUTI_composite_bact
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
UHD15171
LinkDB
All DBs
Position
4079697..4080332
Genome browser
AA seq
211 aa
AA seq
DB search
MDPVVVIDFETTGLSPGMGDRATEIAAVLIRDGRIADHYQSLMNAGVRIPSFIEHLTGIS
NAMVREAPPAGQVMAEVADFVGDYPLVAHNASFDRKFWDAELARIGRRTPQAFACSMLVS
RRVLPQAPNHKLGTLVEYARLPVTGRYHRAQADAEIAAHLTLYLEWALMDRFGLTEVKHD
LLGRIQRTAKTQLESCIARYGGAGASAAASG
NT seq
636 nt
NT seq
+upstream
nt +downstream
nt
atggatccggttgtcgtgattgacttcgagaccaccggtctctctccgggcatgggtgat
cgtgcgaccgagatcgcggccgtcttgatccgcgacgggcgcatcgccgatcactaccag
agcctgatgaatgccggtgtgcgcatcccgtcctttatcgagcacctcaccgggatcagc
aacgccatggtgcgcgaggcaccgccggccggccaggtcatggccgaggtcgcggacttc
gtcggcgactatcccctggtcgcccacaacgcctcgttcgaccgcaaattctgggatgcc
gagctggcgcgcatcgggcgcaggaccccgcaggccttcgcctgctcgatgttggtctcc
cgtcgcgtcttgccccaagcacccaatcacaagctcggtaccctggtcgaatacgcccgg
ttaccggtcaccggccgctatcaccgggcacaggccgatgccgagatcgccgcgcatctg
acgctctatctggagtgggccttgatggatcggttcggactcacggaggttaagcacgac
ctgctcgggcggattcagcggacggcgaagacgcagcttgaaagctgcattgcgcgttac
ggcggagccggcgcgtcggcagcggcaagcggatga
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