Thiocapsa bogorovii: LT988_19425
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Entry
LT988_19425 CDS
T07840
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
tbog
Thiocapsa bogorovii
Brite
KEGG Orthology (KO) [BR:
tbog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tbog03032
]
LT988_19425 (topA)
03400 DNA repair and recombination proteins [BR:
tbog03400
]
LT988_19425 (topA)
Enzymes [BR:
tbog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LT988_19425 (topA)
DNA replication proteins [BR:
tbog03032
]
Prokaryotic type
DNA Topoisomerases
LT988_19425 (topA)
DNA repair and recombination proteins [BR:
tbog03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LT988_19425 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Lar_restr_allev
Toprim_4
DUF1272
Motif
Other DBs
NCBI-ProteinID:
UHD15416
LinkDB
All DBs
Position
4387032..4389332
Genome browser
AA seq
766 aa
AA seq
DB search
MNLVIVESPAKAKTIKKYLGPDFEVIASYGHVRDLVPKEGAVDTENGFAMKYQIIDRNEK
HVQAIAKKLKEADALYLATDPDREGEAISWHLYELLKSRRQLGKRPVYRVVFNEITKRAV
QDAVANPRELSYDLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLICER
EDEIEAFVTREYWSIEADAAKEARRFTAKLVEFEGEKVEQFSIVDGERAATVHRTLEQAA
GGKLKVDEVERKQRKRNPAPPFITSTLQQEAARKLGFTAQRTMRVAQQLYEGVDVGGGPI
GLITYMRTDSVNLAQEALDEIRAYVTERFGSNHLPEQPRFYKTKAKNAQEAHEAIRPTSA
YQVPKEIRAHLSADQFKLYELIWKRTLACQMAHALINQVAITLSAGEGNLFRATGSTVAE
PGFMSVYLEGRDDAKSADDDEERMLPEMKAGDLVDLLAIRPEQHFTEPPPRYSEASLVKA
LEEFGIGRPSTYASIISTLQDREYVVLDAKRFLPTDVGRVVNRFLTEYFTSYVDYDFTAR
LEDDLDAVSRGEGEWVPLLEQFWKPFKERVDHTEASVKRSDVTQERIDETCPKCGGQLSI
RLGRNGRFIGCTNYPDCDYTRDLNPDKAEADAPELIEGRTCPLCNSALEIKRGRYGKFIG
CSAYPTCKHIEPLEKPEDTGVTCPKCTKGTLQKKKSRKGKIFYSCSTYPKCDYAVWDEPI
AEPCPKCGWAVLTIKTTKTKGSSKVCPQKECGFREAIAEDQAEDAA
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcgtcatcgtcgaatctccggctaaggccaagaccatcaagaagtacctcgga
cccgatttcgaggtgatcgcctcctatggtcatgtccgtgacctggtgcccaaggagggc
gcggtcgacaccgagaacggcttcgcgatgaaataccagatcatcgatcgcaacgagaag
cacgtccaggcgatcgccaagaagctcaaggaggccgatgcactctatctcgcgaccgat
ccggaccgcgaaggcgaggccatctcatggcatctttacgagctgctgaagagccgccgt
cagctcggcaagcgaccggtgtatcgggtggtcttcaacgagatcaccaagcgggcggtg
caggatgcggtcgccaatccgcgcgagctgtcctacgacctggtcaacgcccagcaggcg
cgacgcgcactggattatctggtcggattcaatctctcgccgctgctgtggaagaagatc
cgccggggcctctcggcaggccgcgtgcagagcccggcgttgcgtctgatctgcgagcgc
gaggacgagatcgaggccttcgtcacccgcgaatattggtcgatcgaggccgatgcggcc
aaggaggcgcggcgtttcaccgccaagctggtcgaattcgaaggggagaaggtcgagcag
ttcagcatcgtcgacggggaacgtgccgcgaccgtgcaccggaccctcgagcaggccgcc
ggcggcaagctcaaggtcgacgaggtcgagcgtaagcagcgcaagcgcaacccggcaccg
cccttcatcacctccacgctccagcaggaggccgcgcgcaagctcggcttcacggcccag
cgcaccatgcgcgtggcccaacagctctacgagggtgtggatgtcggcggcgggccgatc
ggtctcatcacctacatgcgcaccgactcggtgaatcttgcccaagaggcgttggacgag
atccgcgcctatgtcacggaacgcttcggttcgaatcatctgcccgagcaaccgaggttc
tacaagaccaaggccaagaacgcccaggaagcccacgaggcgattcgccccacctcggcc
tatcaggtccccaaagagatccgcgcccatctcagcgcggatcagttcaagctctacgag
ctgatctggaagcgcaccctggcctgtcagatggcccatgcgctgatcaaccaggtcgcg
atcacgctgagcgccggggagggcaatctcttccgcgccaccggctcgacggtcgccgag
cccggcttcatgagcgtctatctggaaggccgcgacgatgccaagagcgccgacgacgac
gaggagcgcatgctccccgagatgaaggccggggacctggtcgacctgctggccatccgc
cccgagcagcatttcaccgagccgccgccgcgctactccgaggcatccctggtgaaggcg
ctggaggaattcggtatcggccgcccctcgacctacgcctccatcatctcgacgcttcag
gatcgcgagtatgtcgttctggacgccaagcgtttcctgccgaccgatgtcgggcgcgtg
gtgaatcggttcctgaccgagtatttcacctcctacgtggattacgatttcaccgcccgt
ttagaggacgacctggatgcggtctcgcgcggggagggcgaatgggtccccttgctcgag
cagttctggaaacccttcaaggagcgtgtcgaccacaccgaggcatcggtcaagcgcagc
gacgtcacccaggagcgcatcgacgagacctgccccaaatgcggcggccagttgtcgatc
cggctcggacgcaacggccgtttcatcggctgcaccaactaccccgactgcgactacacg
cgcgacctcaaccccgacaaggccgaggcggatgcccccgagctgatcgagggccgtacc
tgcccgctctgcaactccgcgctcgagatcaagcgggggcgctacggcaagtttatcggc
tgcagcgcctacccgacctgcaagcacatcgagccattggagaagcccgaggatacgggt
gtcacctgtcccaagtgcaccaaggggacgctacaaaagaagaaatcccgcaagggcaag
atcttctattcctgttcgacctatcccaagtgcgactacgccgtctgggacgagcccatc
gccgagccctgcccgaagtgcggctgggcggtcttgacgatcaagaccaccaagaccaag
ggttcgtcgaaggtgtgtccgcaaaaggaatgcggtttccgcgaggcgatcgcggaggat
caggccgaagacgcggcctaa
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